Pseudomonas cavernae: D3880_21580
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Entry
D3880_21580 CDS
T08208
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav00521
Streptomycin biosynthesis
pcav00523
Polyketide sugar unit biosynthesis
pcav00525
Acarbose and validamycin biosynthesis
pcav00541
Biosynthesis of various nucleotide sugars
pcav01100
Metabolic pathways
pcav01110
Biosynthesis of secondary metabolites
pcav01250
Biosynthesis of nucleotide sugars
Module
pcav_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
D3880_21580 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
D3880_21580 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
D3880_21580 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
D3880_21580 (rfbB)
00525 Acarbose and validamycin biosynthesis
D3880_21580 (rfbB)
Enzymes [BR:
pcav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
D3880_21580 (rfbB)
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Ortholog
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
NmrA
Motif
Other DBs
NCBI-ProteinID:
AYC34804
UniProt:
A0A385Z7M3
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All DBs
Position
4741791..4742873
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AA seq
360 aa
AA seq
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MTSRILVTGGAGFIGSAVVRHLIANTSAEVANLDKLTYAGNLESLANAADSSRYRFYPVD
ICDAVALDKVFTEFQPDAVMHLAAESHVDRSIDGPAEFIQTNILGTYSLLEAARAYWNGL
NGERKASFRFHHISTDEVYGDLEGTDDLFSETTPYSPSSPYSASKASSDHLVRAWQRTYG
LPVLITNCSNNYGPYHFPEKLIPHVILNALHGKPLPVYGDGSQIRDWLYVEDHARALVEV
VTRGQVGETYNIGGHNEKRNLEVVETICELLDELVPMAGTDDREQARSYKELITFVTDRP
GHDRRYAIDASKIERELGWVPQESFESGLRKTVQWYLDNREWWQRVLSGDYRLGRLGERA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccgcatcctcgtcaccggtggcgccggctttattggctcggcagtggttcgc
catctaattgccaacaccagcgctgaagtcgccaacctcgacaagctgacctacgccggc
aatctggagtcgctggccaacgcggccgactcgtcgcgctaccgtttctacccggtggat
atctgtgatgccgtggcgctggataaggttttcaccgaattccaacccgatgccgtgatg
cacttggccgccgaatcccatgtggatcgctccatcgacggccccgccgaatttatccag
accaatatcctcggcacctacagcctgctggaagcggcgcgtgcttattggaacggcctg
aatggcgagcgcaaggccagcttccgcttccaccacatatccaccgacgaggtgtacggc
gacctggagggcacggatgatctgttcagcgaaaccacaccctactcgcccagctcgccc
tactcggcctccaaggccagttccgaccatctggtgcgtgcgtggcagcgcacctatggg
ctgccggtgctgatcaccaattgttcaaacaactacgggccgtatcacttcccggaaaaa
ctcatcccgcatgtgatcctcaacgccctgcacggcaagccgctgccggtgtatggcgac
ggctcgcagattcgcgactggctgtatgtcgaggaccacgcaagggcgctggtggaagtg
gtgacccgtggccaggtcggcgagacctacaacatcggcgggcacaacgagaagcgcaat
ctcgaggtagtggagacgatttgcgaattgctggatgagttggtgcccatggccggcacg
gatgatcgcgagcaagctcgctcctacaaagagctgattaccttcgtgacggaccgcccc
ggccacgatcggcgctatgccatcgatgcctcgaagatcgagcgcgagctgggctgggtg
ccgcaggaaagcttcgagagcggcctgcgcaagacggtgcagtggtacctggataatcgt
gagtggtggcagcgggtgttgagcggcgattaccgcctgggacgtttgggagagcgggca
tga
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