Pseudomonas cavernae: D3880_22135
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Entry
D3880_22135 CDS
T08208
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pcav
Pseudomonas cavernae
Pathway
pcav02025
Biofilm formation - Pseudomonas aeruginosa
pcav03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
D3880_22135 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
D3880_22135 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcav02044
]
D3880_22135 (tssM)
Secretion system [BR:
pcav02044
]
Type VI secretion system
Imp/Vas secretion system core components
D3880_22135 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
Motif
Other DBs
NCBI-ProteinID:
AYC34909
UniProt:
A0A385Z6I0
LinkDB
All DBs
Position
4854085..4857168
Genome browser
AA seq
1027 aa
AA seq
DB search
MPSCAARIGLSADSRPTWPRTRRGVVRLHPPWWIDTAGRYLTQPEPQVDGRAWASLLGLL
RQSRARPLNGVLVNIPIEQLKNGNERELETLSRQTRQRLQEIHQRLGADLPVYLVLSKAD
KLLGFDESFDQLSREESDQVLGASFRKEQDATDARVVRQELEELLRRLNSQVILRIHQER
DPQRRGRILDFPHQLGQIGEHLGLLIELAFAGNRYQRASQLRGFYLTSAPQLAATLDPLT
AGIGDRIGLPRNVLPTFRSGRARFINQLLGRVIFPEAELAGLDQREVRRIDWGQHAMYAT
ALAMLALFGVLWATGFSANHGRLEQLREIAQQLSRQHDAIAPQDDALQTLEALDNSYAAT
RVFPPVGEVSALQHSGLYQGERVDPTLHRSYRSELENLLLPRVAHQLEVRIRANLGDRER
LLDSLRAYLMLNLEERRDVRFLQEWLAADWSLRYPGNSSGQRRLNEHFGRLLSEPFAPYA
LNAQLVAQARQALRSESQANVVYRMLREEALSLPDYRLSDKLGPQGAVFAGGDTSIPGLY
TQHGYQQYFAARSAGLVRELLRDNWALGEGDELSSGDLNALLVEMEQLYFRDYANYWSEA
IAQLSLEPISSVEQGAGQLNALTAANSPLLALLVEVRDNTRFQGLAAATDDIDETAKALQ
GAKGQLGKAPKLAGATAQQVQAALVQNLPDTARQALERRFAPLHQLLDGSGGPSANLVAA
LQTLDALQQQLAGLVHASAPEQAAFELAKARMGGQHDAVNQLRSSAARLPPPLAGWLGLL
AEDSWMLVLNDAYQFLNQRYQSELYAAYKGSLKQRYPFSAHSESDVALADFREFFKHQGI
AEQFFDSYLKPFVSGSAGDYQLRHIDGRSLPLSREFLAQMGQAQAIRRSFFAENPVEPLV
RFKLEPYSLDSSLGRADFRLGDQQLEYRHGPIAQADFRWPAEAGEGRTSLVVEELGGRRV
GIEKNSGPWSLFRLLDLMQTEYHSGRDVLMVKANLGGLHANYLLHSQRAPNPFDIAMLRN
FKLPANL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagttgcgccgccaggattggcttatcggcagatagtcgtcccacttggcctcga
actcgccgaggcgtagttcggcttcatccgccgtggtggattgataccgccggccgctac
ctgacccagcccgagccgcaggtcgacggccgcgcctgggccagcctgctcggcctgctg
cgccagtcccgcgcccgcccgctcaacggcgtgctggtgaatattccgatcgagcagctg
aaaaatggcaacgaacgggagctggagaccctgtcccggcagacccgccagcgcctgcag
gagatccaccagcgcttgggcgccgacctgccggtctacctggtgctgagcaaggccgac
aagttgctcggtttcgacgagtccttcgaccagctgtcgcgcgaggaaagcgatcaagtg
ctcggcgccagcttccgcaaggaacaggacgccaccgacgcacgggtggtacgccaggag
ctcgaggaactgctgcgtcgcctcaatagccaggtgatcctgcgcatccatcaggagcgc
gatcctcagcgccgtggccgcatcctcgacttcccccaccagctcgggcagatcggcgag
cacctgggcctgctcatcgagctggccttcgccggcaatcgctatcagcgcgccagccag
ttgcgcggcttctacctgaccagcgcaccgcaactggcggccacgctcgacccactgacc
gccggcatcggcgaccgcatcggtctgccgcgcaatgtcctgccgaccttccgcagcggc
cgagcgcgcttcatcaaccagttgctcggccgagtgattttccccgaggccgaactggcc
ggtctggaccaacgcgaagtacgccgcatcgactggggccagcacgccatgtacgccacc
gcccttgccatgctggcgttgttcggcgtgctttgggccactggcttctcggccaaccat
gggcgcctggaacagctgcgcgagatcgcccagcaactgagccgtcagcatgacgccatc
gccccgcaagacgacgccctgcagaccctcgaggcgctggacaacagctatgccgcgacc
cgcgtgtttccgccggtgggcgaggtttccgccctgcagcacagcggcctgtaccagggc
gaacgggtcgacccaaccctgcaccgcagctaccgcagcgaactggaaaacctgctgttg
ccccgcgtggcacaccagctggaagtgcggatccgtgccaatctgggcgaccgcgagcgc
ctgctcgacagcctgcgcgcctatctcatgctcaatctcgaggagcgccgtgatgtgcgc
ttcctgcaggagtggctggccgccgactggtcgctgcgctaccccggcaacagcagcggc
cagcgtcgcctgaatgagcacttcgggcgcctgctgagcgagcccttcgccccctacgcg
ctgaatgcccagctggtggcgcaggcgcggcaggcgctgcgcagcgaatcccaggccaac
gtggtctaccgcatgctccgcgaggaggccctcagcctgccggactaccgcctgagcgac
aagctcggcccgcagggcgcagtattcgccggcggcgacaccagcattcctggcctctac
acccagcatggctatcagcagtacttcgccgcccggagtgccggcctggtgcgcgagctg
ctgcgcgacaactgggcactcggcgagggtgacgagctcagcagcggcgacctcaacgcc
ctgctagtggaaatggagcaactgtacttccgcgattacgccaactattggagcgaggcc
atcgcccagctgagcctggagccgatcagtagcgtcgagcagggcgccgggcaactgaac
gcgctgaccgcggccaactcaccgctgctcgccctgctggtggaagtgcgcgacaacacc
cgcttccagggtctggccgcagccaccgatgacatcgatgaaactgccaaagccctgcag
ggcgccaagggccagctgggcaaggcccccaaactggccggcgccacggctcagcaagta
caagcggcgctggtgcagaacctgccggacactgcccgtcaggccctggaacgccgcttc
gcgccgctgcatcaattgctcgacggcagcggcggccccagcgccaatctggtcgcggcc
ctgcagacactcgacgccctgcagcagcagctcgccggcctggtccatgccagcgccccg
gagcaagccgccttcgaactggccaaggcgcgcatgggcggtcagcacgatgccgttaat
cagctgcgcagcagcgctgcacggttgccgccaccgcttgccggctggctcggtctactc
gccgaagacagctggatgctggtgctcaacgatgcctaccagttcctcaaccagcgctac
cagagcgagctgtacgccgcgtacaagggttcgctgaagcagcgctacccgttcagtgcg
cacagtgagagcgacgtggcgctcgccgacttccgcgagttcttcaagcatcagggcatt
gccgagcagttcttcgacagctacctgaaaccctttgtcagcggcagcgcgggcgactac
cagctgcgtcacatcgacggacgcagcctgccgctgtcacgcgaatttctcgcccagatg
ggccaggcgcaggccattcgccgcagtttcttcgccgagaatccggtcgagccgttggtg
cgcttcaagctcgaaccctattcgctggattccagcctcggtcgcgccgacttccgtctt
ggcgaccagcagctggaatatcgtcacggccctatcgcccaggcagacttccgctggccg
gcggaggccggcgaagggcgtaccagcttggtagtggaagagctaggggggcgtagggtc
ggtatcgagaagaacagcggtccgtggtcgctgttccgtctgctcgacctgatgcagacc
gagtaccacagcggccgcgatgtgctgatggtcaaggccaacctgggcggcctacatgcc
aattacctgctgcatagccagcgcgcgccgaatcccttcgatatcgccatgctgcgcaac
tttaagctgccggccaacctgtga
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