Pseudomonas carboxydohydrogena: AFIC_000033
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Entry
AFIC_000033 CDS
T08963
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFIC_000033 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcax03019
]
AFIC_000033 (pnp)
03016 Transfer RNA biogenesis [BR:
pcax03016
]
AFIC_000033 (pnp)
Enzymes [BR:
pcax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AFIC_000033 (pnp)
Messenger RNA biogenesis [BR:
pcax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFIC_000033 (pnp)
Transfer RNA biogenesis [BR:
pcax03016
]
Prokaryotic type
tRNA degradation factors
AFIC_000033 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
WEF51596
LinkDB
All DBs
Position
35319..37463
Genome browser
AA seq
714 aa
AA seq
DB search
MFNIHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKDGIDFLPLT
VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH
DMENDPDIVAMVAASAALTLSGVPFQGPVGAARVAFVNNEFILNPTLDEMADTQLDLVVA
GTADAVLMVESEAKELPEEVMLGAVMFGHKHFQPVIKAIIDLAEKAAKEPREIETIDNSE
IDKGMRAVGESELRKAYAIPVKQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRVAGVFKE
LEADVVRNNILDTGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG
EDEQFIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH
EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGKRFAVLS
DILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRMHILGEMAK
ALTVARAELGEHAPRIEVLQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDDGTVKVAS
ANGESIRAAIKWIKSITSEPEVGHIYDGTIVKVMEFGAFVNFFGPKDGLVHISQLAANRV
QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDLEAKQKAENAPAAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatatccattccgtcgaactcgactggggcggacgtccgctcaagctggaaacc
ggcaaggtcgcgcgtcaggccgacggcgccgtgatcgccacctatggcgagaccgtcgtc
atcgcgaccgtcgtctccgccaagacgccgaaggacggcatcgacttcctgccgctcacc
gtcaactatcaggaaaagaccttcgcggcgggccgcattcccggcggctacttcaagcgc
gagggccgtccctccgagaaggaaacgctggtctcccgcctgatcgaccgtccgatccgc
cccttgttcatcaagggctatcgctgcgacacccaggtgatcgtcaccacgctgtcgcac
gacatggaaaacgatccggacatcgtcgcgatggtcgccgcttccgccgcgctgacgctc
tcgggcgttccgttccagggtccggtcggcgccgcgcgcgtcgcgttcgtcaacaacgag
ttcatcctgaacccgacgcttgacgagatggccgacacccagctcgacctcgtcgtcgcc
ggcaccgccgacgcggtgctgatggtcgaatccgaggccaaggaattgccggaagaagtc
atgctcggcgccgtgatgttcggccacaagcacttccagccggtcatcaaggcgatcatc
gacctcgccgagaaggccgccaaggagccgcgcgagatcgagaccatcgacaacagcgaa
atcgacaagggcatgcgcgcggtcggcgaatccgagctgcgcaaggcctatgcgatcccg
gtgaagcaggatcgctatgcggcggtcggcgcggtgaagaagaaggtcatggaccacttc
ttccccgagggtcaggagccgaaattcgacaagctccgcgtcgccggcgtgttcaaggaa
ctggaagccgacgtcgtccgcaacaacatcctcgacaccggcgtccgcatcgacggccgc
gacgtcaagaccgtccgtccgatcgtggcggaagtcggcgtgctgccgcgcgctcacggc
tcggcgctattcacccgcggcgaaacccaggcgctggtcgtcaccacgctcggcaccggc
gaggacgagcagttcatcgacgcgctctctggcacgtacaaggagacgttcctgctgcac
tacaacttcccgcccttctcggtcggtgaaacgggccgcatcggctcgccgggccgccgc
gaaatcggccacggcaagctcgcctggcgcgcgatccatccggtcctgccggcgcatcac
gagtttccgtacacgctgcgcgtcgtctcggagatcaccgagtcgaacggctcctcctcg
atggcgaccgtctgcggatcgtcgctggcgctgatggatgccggcgtgccgctgaagcgg
ccgaccgcgggcatcgcgatgggcctgatcctcgaaggcaagcgcttcgcggttctctcc
gacatccttggcgacgaggatcatctcggcgacatggacttcaaggtggcgggcaccgac
aagggtgtcacctcgttgcagatggacatcaagatcgccggcatcaccgaagagatcatg
aagatcgcgctgacgcaggccaaggacggccgcatgcacatcctcggcgagatggccaag
gccctcaccgtcgcgcgtgcggagctcggcgaacatgcgccgcgcatcgaggtgttgcag
atcccgaccgacaagatccgagacgtgatcggcaccggcggcaagatcatccgcgagatc
gtcgagaagaccggcgccaagatcaacatcgaggacgacggcaccgtgaaggtcgcttcc
gccaatggcgaatcgatccgcgcggcgatcaagtggatcaagtcgatcacctcggagccg
gaagtcggccacatctacgacggcaccatcgtcaaggtgatggagttcggcgcgttcgtg
aacttcttcggccccaaggacggcctcgttcacatcagccagctcgcggccaaccgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcctc
gacgatcgcggcaaggtccgcctgtcgatgaaggcggtcgatcagaccaccggcgaggac
ctcgaggccaagcagaaggccgagaacgccccggccgccgagtaa
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