Pseudomonas carboxydohydrogena: AFIC_000045
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Entry
AFIC_000045 CDS
T08963
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFIC_000045 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_000045 (mutM)
Enzymes [BR:
pcax01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AFIC_000045 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AFIC_000045 (mutM)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AFIC_000045 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
WEF51607
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All DBs
Position
complement(48624..49505)
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLIPAMEGARIVRVTAHRGDLRFPLQKDFAARLNGQKVTGLGRRAKYL
LADLESGEVLLMHLGMSGSFRVTLGDGGKIPGSFHHPRSENRTHDHVVFEMGNGATISFN
DPRRFGYMKIVPRADLEDEPFLKALGPEPLGNAFDAAMLARACAGKKTSLKAALLDQRVV
AGLGNIYVCEALFRAHLSPKRQASTLAVKSGAPADHAVRLVAAIRAVLNAAIEAGGSSLR
DHRQTSGELGYFQHSFQVYDREGEPCRTRGCRGTVKRFTQNGRSTFWCPSCQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattacccgaggttgaaacggttcgtcgcggtttgatacccgccatggaaggg
gcgcggatcgtccgtgtcacggcccatcggggcgatttgcgctttccgctgcaaaaggat
ttcgccgcccgcctcaatggccagaaagtgaccggactggggcgccgcgccaaatacctt
ctggccgatctggagtcgggcgaggtgctgctgatgcatctcggaatgtccggttcgttc
cgggtcacgctgggcgatggcggcaagattccgggctcgtttcatcatccgcgcagcgag
aaccgcacccacgaccatgtcgtgttcgaaatgggcaatggcgcgacgatctcgttcaac
gatccgcgccgtttcggctacatgaagatcgtgccgcgcgccgatctcgaggacgaaccg
tttctcaaggcgctggggccggagccgctcggcaatgcgttcgatgccgcgatgctggcg
cgggcctgcgcgggcaagaagacgtcattgaaggcggccctgctcgaccagcgcgtggtc
gcggggctcggcaacatctatgtctgcgaggcgctgtttcgcgcgcatctgtcgccgaag
cggcaggcgtccacgttggcggtgaaaagtggcgcgccggccgatcatgccgtgcggctt
gtcgccgcgattcgcgccgtgctgaacgcggccattgaagcaggcggctcgtcgctgcgc
gaccatcgccagacctcgggtgaactcggctatttccagcactcgtttcaggtctacgat
cgcgagggcgaaccatgccgcacgcgcggttgccgtggtaccgtgaagcggttcacccag
aacggtcgctcgacgttctggtgcccgagctgccagaagtag
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