Pseudomonas carboxydohydrogena: AFIC_000054
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Entry
AFIC_000054 CDS
T08963
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_000054 (addB)
Enzymes [BR:
pcax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFIC_000054 (addB)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AFIC_000054 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WEF51616
LinkDB
All DBs
Position
59377..62541
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AA seq
1054 aa
AA seq
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MHVFNIPSSAPFLHTLLSALVDGRLIENFRARENPELLAQATLYLPTQRACRMAREVFLD
VMGQDAVLLPRIIALGHVDEDELDFAQGDAAGFSSLTVPEALDGLPRRLVLMRLVDAWAR
RLGSRELATAPLVAGGPASTLALADDLARLIDDMTTRGIDWNALDNLVPDDLDRYWQLTL
DFLKIAKDAWPAYLSEQKLIESARRRDLLIEAEAERIAVSSGPFIAAGSTGSMPSTAKFL
RAIARHPQGAVVLPGLDTDLDDDAWRAIGGIRHPEGHFAEHPLSSHPQYALHGLLDSMGL
DRHAVGVLAAPAAHGRELLASEAMRPATETGRWHQRLAEQDIAARIEAGFDNLAIVEAAN
PEMEALAIAVAMREARQHNKTAALVTPDRALARRVMAALGRWKLSFDDSGGDSLMDTPAG
IFARLAAETITTELSPPSLLALLKHPLLRLGQAEGAWTEAIFNLELAVLRGTRPAPGCKG
LQAAFAWFAEEWSKALRKQHSALHRSEPRCRLTQDDIDGIARLLAALTDALAPLENLSRG
AHDFATLAQLHRATLTRLSTADDGRVAVFEGADGSQLAQAFDELLVADNDTPSPAPTHIA
LELADYPDLFATAFASRVVRRPENEDASLRIYGLLEARLTQCDRVILGGLVEGVWPPAPR
IDPWLSRPMRHDLGLDLPERRIGLTAHDFAQLLGVEDVILTHATKVGGAPSVASRFLHRM
KAIAKPEAWDDALERGTRYVRYAEALDHPESVQPVAQPAPKPPVALRPLQMSVTEIEDWL
RDPYTIFAKRILNLTPLDPIDLPLTAADRGSAIHNALGDFTAAYGKILPDNIAAELWSFG
ERHFAGLMEHPEARALWWPRFLRIAEWFAGWEIKRREEVAAIAAELRGEISIPLDNGRSF
TLSARADRIEHRSDGTFAIVDYKTGQPPSGKQVRLGLSPQLTLEAAILRGGGFRPFPARA
SVSELVYVRLNGNNPAGEEKIVDLRIARGDEPQLPDDAADEALAKLTALIRKFENPDQAY
TSLDLAMWSNRYGTYDDLARIKEWSAAGLGGGGA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcttcaacattccctcgtcggcaccgtttctgcacacgcttttgagcgcgctg
gttgatggccgcctgatcgagaatttccgcgcgcgcgaaaatcccgaacttctcgcgcag
gcgacgctctatctgccgacccagcgcgcctgccgcatggcgcgcgaggttttcctcgac
gtgatggggcaggatgccgtgctgctgccgcgcattatcgccctcggccatgtcgacgaa
gacgagctcgatttcgcccagggtgacgccgccggattttcctcgctcacggtgccggag
gcgctggacgggctgccgcgccggctggtgctgatgcggcttgtcgatgcgtgggccagg
cgcctcggttcgcgcgagcttgccaccgcgcctctggtcgcgggcggccctgcatcgact
ctcgctttggccgacgatcttgcccgtctgatcgacgacatgaccacgcgcggcatcgac
tggaacgcgctcgacaatctcgtgccggacgatctcgaccgctattggcaacttacgctc
gacttcctcaagatcgccaaggatgcgtggcccgcttatctgagcgagcagaaactcatc
gagtccgcgcgccgccgcgatctcctgatcgaggcggaggccgagcggatcgcggtgtca
tccggccctttcatcgcggcaggctcgaccggctcgatgccgtccaccgccaaattcctg
cgcgcgattgcgcggcacccgcaaggcgcggtggttctgccgggactcgacaccgatctc
gacgacgacgcatggcgcgccattggcggcatacgccaccccgaaggacacttcgcggaa
cacccgctgtcgagccacccgcaatatgctctgcatggcctgctggattcgatggggctc
gatcgtcatgctgtcggggtgctggccgcacccgccgcgcatggccgtgaactgctcgcc
tcggaagcgatgcggcccgccaccgaaaccgggcgatggcaccagcgcctcgccgagcag
gacatcgccgcgcgcattgaagcaggcttcgacaatctcgccattgtcgaggcggccaat
ccggagatggaggctcttgccatcgcggtcgcgatgcgggaagcgcgacagcacaacaag
accgccgcgctggtgacgccggatcgcgcgctggcacgccgcgtgatggcagcccttggc
cgctggaagttatccttcgacgattccggcggcgattcgctgatggatacgcccgcgggc
attttcgcccgccttgccgcggagaccatcaccaccgagctgtcgccgccatcgctgctc
gcgctgctgaaacacccgctgctccgactgggacaggcggaaggcgcctggacagaagcg
atcttcaatcttgaactcgcggtgctgcgcggcacacggcccgcgcccggctgcaaggga
ttgcaggcagcgttcgcgtggttcgccgaggaatggagcaaggccctacgcaagcaacat
tccgcgctgcatcgctccgagccgcgctgccggctgacgcaagacgacatcgacggcatt
gcacggctgcttgccgcactgacggatgccctcgcgccgctcgaaaatctttcgcgtggc
gcgcacgacttcgcaacgctggcgcagctccatcgcgcaacgctgacccgcctgtctacc
gccgatgacggccgcgtcgctgtctttgagggcgcagacggatcgcagctcgcgcaggcg
tttgatgaactgctcgtggccgacaatgatacgccttctcccgcgccaacgcacatcgcg
cttgagcttgcggactatcccgatttgttcgcgaccgcttttgccagccgcgtggtgcga
cggccggaaaacgaagatgcatcgctgcggatttacggcctcctggaagcgcgcctcacg
caatgcgaccgcgtgatcctcggaggcctcgtcgaaggcgtgtggccgcccgcgccgcgc
atcgatccgtggctgtcacgcccgatgcgccacgatctcggcctcgatctgccggaacgg
cgcatcggcctcaccgcgcacgacttcgcgcaactgcttggcgtggaagacgtcattctc
acgcacgccaccaaggtcggcggcgcgccgtcggtcgcctcgcgattcctgcatcgcatg
aaggcaattgccaaaccggaggcgtgggatgacgcgcttgaacgcggtacgcgctacgtg
cgttatgccgaggcgctcgatcatcccgagagcgttcagcccgtcgctcaaccggcaccg
aagccgccggtggcgctgcggccgttgcagatgtcggtgacggagatcgaagactggctg
cgcgatccttatacgatcttcgccaagcgcattttgaacctcacgccgctcgatccgatc
gatcttcccttgaccgcggcggatcgcggctcggcgatccataacgcgctcggggatttc
accgcagcctacggcaaaatcctgccggacaatattgcggcagaactgtggtctttcggg
gaacgtcatttcgcaggcttgatggagcaccccgaggcgcgggcgctgtggtggccgcgc
ttcctgcgcatcgcggaatggttcgccgggtgggaaatcaagcgccgcgaggaggtcgcc
gcaatcgccgccgaattgcgcggcgagatttcgatccccctcgataacggacgcagcttt
actctgagcgcgcgcgcggatcgcatcgagcaccgcagcgacggcaccttcgccatcgtc
gattacaagacgggccagccgccgagcggcaagcaggtgcggcttggtctgtcgccgcaa
ctcacgctggaagccgccatcctgcgtggcggcgggttcaggccgttcccggctcgcgcc
agcgtcagcgaactggtctatgtccggctcaacggcaacaatccagcgggcgaggagaag
atcgtcgatctgcgtatcgcgcgcggcgacgaaccccaactgccggacgatgcagccgac
gaggcgctcgccaagctcaccgcgctcatcagaaaattcgagaaccccgatcaggcctac
acctcgctcgatctcgcgatgtggtcgaaccgttacggcacctatgacgatcttgcccgc
atcaaggaatggtcggctgcgggccttggcggaggcggcgcatga
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