Pseudomonas carboxydohydrogena: AFIC_000075
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Entry
AFIC_000075 CDS
T08963
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax02020
Two-component system
pcax02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AFIC_000075 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AFIC_000075 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcax03021
]
AFIC_000075 (rpoN)
Transcription machinery [BR:
pcax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFIC_000075 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WEF51635
LinkDB
All DBs
Position
complement(83059..84693)
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AA seq
544 aa
AA seq
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MALTQRLEFRQSQALVMTPQLMQAIKLLQLSNLDLVAFVEGELERNPLLERNDEEAPVRG
EGAAGEQDFSGNDDGGDDQPGSEPARGPGEPSDDWMNRELGSRAEIEQTFDTSMDNVFTE
EPSETATRAAQDAAPTSYTEWGGGASSDEDYNLEAFVAAETSLQDHLAEQLAVALTDPAQ
RMIGQYLIDLVDEAGYLPPDLGEAADKLGTTQKAVDDVLAVLQTFDPPGICARTLSECLA
IQLRERDRYDPAMRALVEHLDLLAKREIAALRKICGVDDDDIADMIGEIRHLDPKPGLKF
ATGRTQTVVPDVYVRPGPDGGWLVELNSDTLPKVLVNQSYYASLTRTLRKDEDKSYFADC
LQNATWLVRALDQRARTILKVATEIVRQQDGFFTRGVAHLRPLNLKAVADAIQMHESTVS
RVTANKYMATNRGIFELKYFFTASIASADGGEAHSAESVRHRIKQMIDAEEPNDILSDDT
LVERLRAEGVDIARRTVAKYREALRIPSSVQRRREKRYALGQVSGHSGAATPSSSDRPRD
IAPA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaacgcttggaatttcgccagtcgcaagcactggtgatgacgccgcag
ttgatgcaggcgatcaagctgctgcaattgtccaatctcgatctggtggcgttcgtcgag
ggcgagctggagcgcaatccgcttctggagcgtaacgacgaagaagcgccggtgcgcggc
gaaggcgcggcaggggaacaggatttttccggaaatgacgatggcggggacgaccagccg
ggcagcgagcctgcgcgcggccccggcgagccgtccgacgactggatgaatcgcgaactc
ggcagccgcgccgagatcgaacagaccttcgacaccagcatggacaacgtcttcactgag
gagccttcggagacggcgacgcgcgcggcgcaggatgccgcgccgacctcctacaccgaa
tggggcggcggcgcttccagcgacgaggactataatctggaggctttcgtcgccgccgaa
acctcgttgcaggatcatctggccgaacagctcgcggtcgcgctgaccgatcccgcgcag
cgcatgatcggccagtacctgatcgatctcgtcgatgaggcgggctatctgccgccggat
ctcggcgaagccgccgacaagctcggcaccactcagaaagccgtcgatgatgtgctcgcg
gtgttgcagacgttcgatccgccgggcatctgcgcgcggactctgagcgagtgcctcgcg
atccagttgcgcgagcgcgaccgatatgatccggcgatgcgcgctctggtcgagcatctc
gatctgctggcgaagcgcgagatcgcggctttacgaaaaatctgcggcgtcgatgacgac
gacatcgccgacatgatcggcgagatccgtcatctcgatcccaagcccggattgaaattc
gcgaccgggcggacgcaaacggtggtgcccgacgtctatgtgcggccggggccggacggc
ggctggctcgtcgaactcaacagcgacacgctgcccaaggtgctcgtcaaccagtcctat
tacgcgagcctcaccaggacgctgcgcaaggacgaggacaagtcctatttcgccgattgc
ttgcagaacgcaacctggctggtgcgcgcgctcgatcagcgcgcgcggaccatcctgaaa
gtggccaccgagatcgtgcgccagcaggatggcttcttcacgcgcggcgttgcgcatttg
cgcccgctcaacctcaaggcggtggcggacgcgatccagatgcacgaatcgacggtgtcg
cgcgtcaccgccaacaaatacatggcgacgaatcgcggtatcttcgaattgaaatatttc
ttcactgcgtccatcgcttccgccgacggcggcgaggcgcattcggccgaatccgtgcgg
catcgcatcaaacagatgatcgatgccgaggagccgaacgatattctgtcagacgacacg
ctggtggaacgcttgcgcgctgagggcgttgatattgcccggcgcaccgtggcgaaatac
cgggaagctctgaggataccgtcatccgttcagcgccgccgtgaaaagcgttatgcgctt
ggtcaagtttccggccattccggagccgcaaccccttcttccagcgaccggccgcgcgac
atagctcccgcttga
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