Afipia carboxydohydrogena: AFIC_000392
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Entry
AFIC_000392 CDS
T08963
Symbol
xerD
Name
(GenBank) site-specific tyrosine recombinase XerD
KO
K04763
integrase/recombinase XerD
Organism
pcax
Afipia carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcax03036
]
AFIC_000392 (xerD)
Chromosome and associated proteins [BR:
pcax03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
AFIC_000392 (xerD)
BRITE hierarchy
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GFIT
Motif
Pfam:
Phage_integrase
Phage_int_SAM_1
Phage_int_SAM_4
Motif
Other DBs
NCBI-ProteinID:
WEF51937
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All DBs
Position
complement(408243..409202)
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AA seq
319 aa
AA seq
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MAASSDARTIDLFLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAKQDFARADTQALRDY
LADLDHRGFKSSSVARRLSSMRHLFRFLLNERKRSDDPAAILAGPRRGRALPKVLSIADV
DRLLAKAREFADRDQSPLQKLRAMRLWCLLEVLYATGLRVSELVALPVSAARRDARMIVV
RGKGDKERLVPLNQSSRDAMAAYLAAAGSAREDKGEKAKPEPASKWLFPSSGESGHLTRQ
HFARDLKELAVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTH
VVEERLKSLVRDLHPLAEK
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggccgcatcctccgacgcaagaacgatcgatctgtttctcgacatgctcgccgccgaa
cagggcgcgggcgacaacacgctcaacgcctaccgcagcgacctcgaggacctcgcggct
tttctcgcgcgcgccaaacaggatttcgcgcgcgccgatacgcaggcgctgcgcgactat
ctcgccgacctcgaccatcgcggtttcaaatcatcaagcgtggcgcgacggctgtcgtcg
atgcggcatctgtttcgctttctgctcaacgagcgcaagcgcagcgacgatcccgccgcg
attctcgcaggccccaggcgcggccgcgcgctgccgaaagttttgtccatcgccgatgtc
gatcgattgctcgcgaaggcgcgcgaattcgcggaccgcgatcaatcaccattgcagaag
ctgcgcgcgatgcggctgtggtgcctgctcgaggtgctgtacgccaccggcctgcgcgtc
tcggaattggtggcgcttcctgtatccgcagcgcggcgcgatgcacggatgatcgtggtg
cgcggcaagggcgacaaggagcgtctcgtccccctcaaccagagttcgcgcgatgcgatg
gccgcctacctcgccgctgccgggtccgctagggaagacaagggcgaaaaggcaaagccc
gaacccgcctcaaaatggctgtttccgtcctcgggagagagcgggcacctgacgcggcag
cattttgcacgcgatctgaaggagcttgcggtcgccgccggtatttcgccgcgcctcatc
agcccgcatgtgctccgtcacgccttcgcgagccacctgctgcataatggcgcggattta
cgtatcgtgcagaccctgctcggccacaccgacatctccacgacgcagatctatacccat
gtggtggaggagcgattgaagagtctggtgcgcgaccttcatccgctcgcggaaaaataa
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