Afipia carboxydohydrogena: AFIC_000446
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Entry
AFIC_000446 CDS
T08963
Name
(GenBank) exonuclease domain-containing protein
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AFIC_000446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_000446
Enzymes [BR:
pcax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AFIC_000446
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AFIC_000446
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AFIC_000446
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFIC_000446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
WEF51989
LinkDB
All DBs
Position
463842..465254
Genome browser
AA seq
470 aa
AA seq
DB search
MSFVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIERFEARSRLLPHVLPHPAALRTNGL
PIGRLLDAGLPSHYDMVRAIRQRLLSWSPSIFLGYNSIRFDEEMLRHALFQTLHPAYLTS
NHNNSRADVWGLVMAAAAVSPACLNVPIGPEGRPIFRLEQLALANGVAQEQAHDALSDVI
TTLELCRLVHQRSPELWQRFVRFSKKATVADFVEAEDGFMLTEFFANQAYHTPVVRIGRD
PDQANGRFCLSLNSDVDRLAAMTDDELRAELAQKPCPVRRLRINAAPTLTALYDAPGLML
DGLDLDTIEARARRVKDDPSLCTRLVAAYTSTREPRIPSRHAEERLYDGFPGPQDEARMV
EFHDAEWTDRLAIVQSLDDERLRFFGLRLLYFEARSVLPEALRLELERALSGRLVDAEAG
GLTLEQALRAIDETLGDDGSDAGGLLADYRSYLVGRMARVTDFRAKQFAI
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgagctttgtcttcttcgacactgagacaaccggcctgaagcacggcttcgaccagatc
gtgcatttcgcggccatacggaccgacgcaaatctgaatgagatcgagcgtttcgaagcg
cgttcgcgtcttctgccgcatgtgcttccccatccggcggcgctgcgcaccaatggcctg
ccgatcggaagactcttggatgcgggtcttccgtcccattacgacatggtcagagcgatc
cggcagaggctgctctcgtggtcaccttcgatctttctaggctacaactcgatccgtttc
gacgaggagatgttgcggcacgcgttgttccaaacgcttcaccccgcctatcttaccagc
aaccacaacaacagccgtgcggacgtgtgggggctggttatggccgcagccgctgtgtcg
ccggcatgtctcaacgttccaattggtccagaggggcgaccgatctttcgccttgaacaa
ttggcgctcgccaacggcgtcgctcaggaacaggcccacgatgctctgtccgacgtcatc
accacgctcgaactttgtcgcctcgtgcatcagcggtcgccagaactctggcagcgcttc
gtacgcttttcaaagaaagcgaccgtcgccgacttcgtcgaagctgaagatggattcatg
ctcaccgagttctttgccaatcaggcatatcacacgccggtggtgcgcattggtcgagat
ccggatcaagccaatggccgcttttgtttgagtctcaacagtgacgtggatcgcctcgca
gcaatgacagacgatgagcttcgagccgagctggctcagaagccctgtccggttcgccgg
cttcggatcaacgcagcgccaacattgacggctctctatgacgcgccagggctgatgctg
gatggcctcgatcttgatacgattgaagcgcgagcgcgccgggtgaaggatgatccgtcg
ctctgcacgaggcttgtcgcagcttacacttcaacgcgcgaaccacggattccttcgcgg
catgccgaggagcgcctctatgacggatttcctggtccgcaagacgaagcccgcatggtc
gaatttcatgatgcggaatggacggatagattagcgattgttcaaagtctcgatgatgag
cgcctgcgatttttcggccttcggttgttgtacttcgaggcgcgatcggttctaccagaa
gctctcagactcgaacttgagcgtgctttaagcggccgcttggttgatgccgaagcgggc
ggtctaactctcgaacaggccctgcgcgcgatcgacgaaacgctaggtgatgacggatct
gatgcgggaggactgctggcagactaccgctcatatcttgtcggtcggatggcgcgggtc
accgattttcgggcgaagcagttcgccatctag
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