Afipia carboxydohydrogena: AFIC_000524
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Entry
AFIC_000524 CDS
T08963
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax03030
DNA replication
pcax03410
Base excision repair
pcax03420
Nucleotide excision repair
pcax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFIC_000524 (polA)
03410 Base excision repair
AFIC_000524 (polA)
03420 Nucleotide excision repair
AFIC_000524 (polA)
03440 Homologous recombination
AFIC_000524 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcax03032
]
AFIC_000524 (polA)
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_000524 (polA)
Enzymes [BR:
pcax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFIC_000524 (polA)
DNA replication proteins [BR:
pcax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AFIC_000524 (polA)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AFIC_000524 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFIC_000524 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WEF52063
LinkDB
All DBs
Position
complement(550016..553048)
Genome browser
AA seq
1010 aa
AA seq
DB search
MAKSPAKSAAPRTPAGVKPPAKGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQVNAVLGF
CNMLWKLMRDMPPDNRPTHLAIVFDRSEVTFRNTIYPEYKAHRPPAPDDLIPQFALIREA
VRAFDLPCLEQAGFEADDLIATYVRQACERGASATIVSSDKDLMQLVTDCVTMYDTMKDR
RLGIPEVIEKFGVPPEKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARA
GEIKQPKRRESLIEHAGKARISRELVLLDNNVKLDVPLDELAVHEPDSRKLIAFLKAMEF
STLTRRVAEYAQIDAADVRPDDHLKSANAPSPLPPSGEASARSTTGSDLFSSDDTPPSPA
RGGVSRVVTNGDSSPSSPQTLAAARTSQAATGKIERSKYQTIRTLDELNVWITRAHDLGH
VAIDIKATSIDPMQAGICGIALALAPNEACYIPLGHKKSGGGDDLFASGLAEGQIETAQA
FEALRRLLESNAVLKSGFDIKFTSVMLAQHKIALRTIDDVQLMSYALDAGRGAHDIESLS
EQWLGHAAISHGDVIGSGRNKLSLDQVTIERATEYGAETADIVIRLWLLMKARLVAERMN
NVYESLERPLVGVLARMERRGIMIDRQVLSRLSGDFAQTATRLEAEIREIAGEDINPGSP
KQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAEEGHVFPRKILDWRQVSKLKSTYTD
ALPTYVNPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLV
SADYSQIELRLLAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKDMPGEVRRRAKAINF
GIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYVDATRDFCREHGYVETLFGRK
CHYPDIKASNPSLRAFNERAAINARLQGTAADIIRRAMIRMEDALTQKKLAARMLLQVHD
ELVFEVPDGKVDATIPVIREVMENAAFPAARLSVPLHVDARAAHNWDEAH
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagtcccccgcaaaatccgccgctccgcgcacgcccgccggggtgaagccgccc
gcgaagggcgaccatgtgtttctggtcgacggctcgggttacatcttccgcgcctatcac
gcgctgccgccgctgaatcgcaaatcggacggcttgcaggtcaacgccgtgctcggcttc
tgcaacatgctgtggaagctgatgcgcgacatgccgccggacaaccggccgacgcacctc
gccatcgtgttcgacaggtccgaggtcacgttccgcaacacgatctatcccgaatacaag
gcacaccgtccgcccgcgccggacgatctcattccgcaattcgcgctgatccgcgaagcg
gtgcgcgccttcgacctgccctgcctcgaacaggcgggcttcgaggccgacgacctgatc
gcgacctatgtgcggcaggcctgcgagcgcggcgcgagcgcgaccatcgtctcctccgac
aaggacctgatgcaactcgtgaccgattgcgtcacgatgtacgacaccatgaaggaccgc
cgcctcggcatccccgaggtgatcgagaagttcggcgtgccgccggagaaggtggtcgag
gtgcaggcgctggcgggcgattccgtcgacaatgtgccgggcgtgcccggcatcggcatc
aagaccgcagcccaactcatcaatgaatatggcgaccttgaaacgctgctcgcgcgcgca
ggcgagatcaagcagccgaagcggcgcgagtcgctgatcgaacatgccgggaaggcgcgc
atctcccgcgaactcgtgctgctcgacaacaacgtgaaactcgacgttccgctcgacgag
cttgctgtgcacgagccggattcgcgcaagctgatcgcgttcctcaaggcgatggaattc
tccacgctgacgcggcgcgtggccgaatacgcccagatcgacgccgccgatgtgcgtccc
gacgatcacctgaaaagcgcgaacgcaccttcgcctctcccgccttcgggggaagccagc
gcgcgcagcacgacgggtagcgaccttttttccagcgacgacaccccgccctcccccgcg
cgcgggggagtgagcagggtcgtgaccaatggcgacagctcgccttcctcgccgcagacc
ctcgcggccgcccgcacgtcgcaggccgcgaccggcaagatcgagcgcagcaaatatcag
accattcgcacgctcgacgaactgaacgtgtggatcacgcgcgcccacgatctcggccat
gtcgccatcgacatcaaggcgacctcgattgatccgatgcaggccggcatctgcggcatc
gcgctggcgctcgcgcccaacgaagcctgctacattccgctcggccacaagaaatccggc
ggcggcgacgatctgttcgcgagcggccttgccgagggacagattgagaccgcacaggcg
ttcgaggcgctgcgcaggcttctcgaatccaacgcggtgctgaaatccggcttcgacatc
aagttcacctccgtgatgctggcgcagcacaagatcgcgttgcgcaccatcgacgacgtg
caactgatgtcctacgcgctcgacgccgggcgcggcgcgcacgacatcgaatcgctgtcg
gagcaatggctcggccatgcggcgatcagccatggcgacgtgatcggcagcggccgcaac
aagctctcgctcgatcaggtgacgatcgaacgcgccaccgaatatggcgcggagactgcc
gacatcgtcatccggctgtggcttttgatgaaggcgcggctcgtcgccgagcgcatgaac
aacgtctatgaatcgctggaacggccgctggtcggtgtgctggcgcggatggaacggcgc
ggcatcatgatcgacaggcaggtgctgtcgcgcctgtccggcgatttcgcgcaaaccgcg
acgcggctcgaagccgaaatccgcgagatcgcgggcgaggacatcaaccccggcagcccc
aagcaactcggcgacgtgatcttcggcaagatgggtttgcccggcggccagaagacgaaa
accggcgcatggtcgacctccgcctcgatcctcgaggatctcgccgaggaaggtcacgtc
ttcccgcgcaagattctcgactggcgtcaggtctcgaaactgaaatcgacctacaccgat
gcgctgccgacttacgtcaatccgcagacccagcgcgtccacaccacctacgcgctcgcc
gccaccaccacgggacgtctgtcgtcgaacgagccaaatttgcagaacatcccggtgcgc
accgaggacggccgcaagatccgccgcgccttcatcgccgagaaaggccacaagctcgtc
tcggccgattattcgcagatcgaattgcgactgctcgccgagatcgccgatattccggtg
ctgaagcaggcattccacgacaagctcgacattcacgccatgacggcgtcggaaatgttc
ggcgtgccggtgaaggacatgccgggggaagtgcgccgccgcgccaaggcgatcaatttc
ggcatcatctacggcatctcggcgttcggcctcgccaaccagctcggcattccgcgcgag
gaagccggcgcctacatcaagaaatatttcgaacgcttccccggcatccgcgcctacgtg
gacgcgacgcgcgatttctgccgcgagcacggctatgtcgagacgctgttcgggcgcaaa
tgccattaccccgacatcaaggcgagcaatccgtcgctgcgcgccttcaacgagcgcgcc
gcgatcaacgcgcgtttgcaaggcaccgccgccgacatcatccgccgcgccatgatccgg
atggaggacgcgctgacgcaaaagaagctcgccgcgcggatgctgttgcaggtgcacgac
gagctggtgttcgaggtgccggacggcaaggtcgatgcgaccattcccgtcatccgcgag
gtaatggagaatgcggcgttccccgcagcgcgcctgtcggtgccgctgcatgtcgatgcc
cgcgccgcccacaattgggacgaggcgcactag
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