Afipia carboxydohydrogena: AFIC_000598
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Entry
AFIC_000598 CDS
T08963
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFIC_000598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcax03019
]
AFIC_000598
Enzymes [BR:
pcax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFIC_000598
Messenger RNA biogenesis [BR:
pcax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFIC_000598
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
DUF8086
Motif
Other DBs
NCBI-ProteinID:
WEF52133
UniProt:
A0ABY8BQ59
LinkDB
All DBs
Position
complement(628774..630306)
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AA seq
510 aa
AA seq
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MTSFQDFGLADPISRALAEENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPI
LHRLLENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYGRHLRLSATLAIGGVPMGRQVR
AMMQGVEVLVATPGRLIDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPAR
RQTLFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAERITQRIIQLDHSAKPAMLSELL
KSEPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLAAFRNGDIRTLV
ATDIAARGIDVDGITHVFNFDLPNVPETYVHRIGRTARAGADGTAISLVAGEENTYLRDI
ERLIRVNLPREDRRTGKHDATPPAAQPRKNHRGKGHGGQGHGGHQGHNGQGHGKGRSFEA
PDRGHGDNAPGARGPQRRRRHPGHGANPGPNPGSHHDPAATPRAEQGKHERTRPSQAGQG
SGIQGVAFLHRGSAPARTASQPNRNRRPQR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggcctcgccgatcccatctctcgtgctctcgccgaagag
aattacgtcacccccactcccatccaggcccagaccattccgatcgcgatcaccggacgc
gacgtggtcggcatcgcccagaccggcaccggcaagaccgcctcgttcgcgctgccgatc
ctgcatcggcttctggagaaccgggttcgcccgcagcccaagacctgccgcgttctggtt
cttagccccacccgcgaactgtccgggcagatcctcgacagcttcaacgcctatggccgc
cacctgcgcctgagcgccacgctcgccatcggcggcgtgccgatgggccgtcaggtccgc
gccatgatgcagggcgtcgaggtgctggtggcgacccccggccgcctcatcgatctcgtt
cagggcaatgccgtccggctcaatcaggtcgagtttctcgtcctcgacgaggccgaccgc
atgctcgacatgggcttcatcaacgacatccgcaaaatcgtggccaagctgcccgcacgc
cgccagacgctgttcttctcggccaccatgccgaaggacatcgccgaactcgccgagcac
atgctgcgcgatccggcgcgcgtcgcggtgacgccggtgtcctccacggccgagcgcatc
acccagcgcatcatccagctcgatcacagcgccaagccggccatgctttcggagctgttg
aagtccgagccggtcaaccgggcgctggtcttcacccgcaccaagcacggtgccgacaag
gtcgtgcgcggcctcgtcaaggcgggcattccctcggaagcgatccacggcaacaaatcg
cagaaccatcgcgagcgcgtgctggccgcgttccgcaacggcgacatccgcacgctggtc
gcgaccgacatcgcggcgcgcggcatcgacgtcgatggcatcacccacgtcttcaacttc
gatctgccgaacgtgccggagacctacgtccaccgcatcggccgcaccgcgcgcgcgggc
gccgatggcaccgcgatttcgctcgtggcgggtgaggaaaatacctatctgcgcgacatc
gagcggttgatccgcgtcaatcttccccgcgaggaccggcgcaccggcaagcacgatgcg
accccgcccgccgcgcagccgcgcaagaaccatcgtggcaagggccacggcggccagggg
cacggcggtcatcagggacataatggtcagggacacggcaaaggccgctcctttgaggcg
cccgatcggggccatggcgataacgcccccggggcccgcgggccgcaacgccggcggcgg
catcccggccatggcgccaaccccggcccgaaccccggctcccatcacgatccggcggcc
acgccccgcgccgaacagggcaaacatgagcgaactcggccgtcgcaagccggccaggga
agcggtatacagggcgtcgccttcctccaccgtggcagcgcgcccgcgcgcaccgcatca
caacccaatcgcaatcggcgcccgcagcgctga
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