Pseudomonas carboxydohydrogena: AFIC_000600
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Entry
AFIC_000600 CDS
T08963
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcax03021
]
AFIC_000600
Transcription machinery [BR:
pcax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFIC_000600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
DUF134
HTH_23
GerE
HTH_28
Motif
Other DBs
NCBI-ProteinID:
WEF52135
LinkDB
All DBs
Position
complement(632743..633291)
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AA seq
182 aa
AA seq
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MPLTDSLRDEILASVPSLRAFAISLSGKSDRADDLVQETLLRALANIDSFQPGSNLPAWL
FTILRNLFRSDYRKRRREVEDAEGSYSKTLKSQPAQSSHLEFEEFRAALEKLPQDQREAL
ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSAMLYVDGTEDFGPDSTVRAVIGGS
GN
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcacagattctcttcgcgacgagatcctcgcgtcggtgccgagtctgcgcgcc
ttcgcgatttcgctcagcggcaaaagcgaccgcgccgacgatctggtgcaggaaacgctg
ctgcgcgcactcgccaatatcgactcatttcagcccggctcgaatctgccggcctggctg
ttcacgatcctgcgcaacctgtttcgctcggattatcgcaaacggcggcgcgaggtcgag
gatgccgagggcagctattctaagacgctgaagtcgcagcctgcgcaaagctcgcatctc
gaattcgaggagtttcgcgcggccctcgagaaattgccgcaggaccagcgcgaggctctc
atcctcgtcggcgcctccggtttctcgtacgaggatgcagcggcgatctgcggatgcgcg
gtcggcaccatcaagagccgcgtcaaccgcgcccgttcgaaactcagcgccatgctgtat
gtcgacggcacggaggacttcggccccgacagcacggttcgcgccgtgatcggcggcagc
ggcaactga
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