Pseudomonas carboxydohydrogena: AFIC_000830
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Entry
AFIC_000830 CDS
T08963
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pcax01002
]
AFIC_000830
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pcax01011
]
AFIC_000830
Peptidases and inhibitors [BR:
pcax01002
]
Cysteine peptidases
Family C82
AFIC_000830
Peptidoglycan biosynthesis and degradation proteins [BR:
pcax01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
AFIC_000830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
WEF52349
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All DBs
Position
complement(868572..870698)
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AA seq
708 aa
AA seq
DB search
MHDFSTGRSGFDRVLAAVAATFLLTGTATLAHADPAKPADAAAISAAVPTPDTSNVPPPT
AADLKSEAAKTAAEPAKADAKTGNNAAAADAPKTGAATPAEAAKTEPAKADTATTAPAAP
ARPDDVKTDNAKTETPAAAPAVAALDPSAEALRSLVTAKASKYFDRKKEREAVEAFYKDR
NYAPLWTKGAAATARANDAIARLKKADEDGLDADDYPVPNFAAAATPDAQADAELKLTES
VLDYARHAQSGRMHWSQVSGDIQYPEHSPDPAEVLINVSTARNAGAALETYNPPHKLYKE
LKAKLAELRGKTEEAAKIADGETLRFVKPTKKNPNPAMMDDARVPALRAKLGVTENASDT
HYDATVAAAVRKFQSANDLKATGVLDNHTVAALNGPRNDRKIDIVRVNMERWRWLPRDLG
AAALGDAYVILNIPDYSLQLMHNGATAWKTRVVVGKPGKHATPLLTETMKYITVNPTWNV
PPSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTIRISQPPGEANALGRIRFNFPNKFLV
YQHDTPDKYLFAKSERAFSHGCMRVQNPDQYAATILSIALPKDHYTPEKIRSMYGHNEIN
INLPTPLPVNITYQTAFVDDAGKLEFRKDIYGRDATMIKLLKEGGRRNLETVVAHSQPNY
VRPTGNINIPGDGYADRSSAPNFFQMLFGGGGRAEAEPEPRSRRRSYR
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacttctcgaccggccgcagcggtttcgatcgcgtgctggcagccgttgcggca
accttcctgctgaccgggaccgcaaccttggcccatgccgacccggcgaagccagcggat
gccgccgccatcagcgccgcagttcccacacctgacacgtcgaacgtcccgccgcccacc
gccgccgacctcaagtccgaagcggccaagactgccgccgagcccgccaaggcggatgcg
aagaccggcaacaatgcggcggccgccgacgcgccgaaaaccggcgccgccacacccgcc
gaggccgccaaaaccgagcctgcgaaggccgatacggccacgacagcccccgccgctccg
gccaggccggatgacgtcaagaccgataacgccaagaccgaaactccggccgccgctccc
gccgtcgctgcactcgatccgtccgccgaggcgctgcgcagcctggtgaccgcgaaggcg
tcgaagtatttcgaccgcaagaaagaacgcgaggcggtggaagccttctacaaggaccgc
aactacgccccgctgtggaccaagggcgccgccgcgacggcgcgcgccaacgacgcgatc
gcgcggctgaagaaggccgatgaggacggcctcgacgccgacgattatccggtgccgaat
tttgccgccgcggccacgcctgacgcgcaggccgacgccgaactgaagctgaccgaaagc
gtgctcgactacgcccgccatgcccagagcggccgcatgcactggtcgcaggtgtccggc
gacatccagtatcccgagcactctcccgacccggccgaagtgctgatcaacgtctcgacc
gcgcgcaatgccggcgcggcccttgagacctacaatccgccgcacaagctctacaaggag
ttgaaggcgaagctcgccgagctgcgcggcaagaccgaggaagccgccaagatcgccgac
ggcgagacgctgcgcttcgtcaagccgaccaagaagaacccgaaccccgcaatgatggac
gacgcccgcgtgcccgcgttgcgcgccaagctcggcgtcaccgaaaatgcgagcgacacc
cattacgacgcgaccgtcgccgcagcggtgcgcaaattccagagcgcgaacgatctcaag
gccaccggcgttctcgacaaccacacggttgcagcgctcaacggtccgcgcaacgaccgc
aagatcgatatcgtccgcgtcaacatggagcgctggcgctggctgccgcgcgatctcggc
gcggccgcgctcggcgatgcctatgtcatcctcaacattcccgattacagcctccagttg
atgcataatggcgcaacggcctggaagacccgtgtcgtcgtcggcaaacccggcaagcac
gccacgccgctgctgacggagacgatgaagtacatcaccgtcaatccgacctggaacgtg
ccgccgtcgatcatctacaacgagtacctgcccgccttgcagcaggacccgaccgtgctt
gagcgcatgggcctcaagctccagcgcaaccccgatggcaccatccgcatctcgcagccg
ccgggcgaagccaacgcgctcggccgcatccgcttcaacttcccgaacaagttcctcgtc
tatcagcacgacacgccggacaaatatctgttcgccaagagcgagcgcgcgttcagccat
ggctgcatgcgggtgcagaatccggatcagtacgccgcgacgatcctgagtatcgcgctg
ccgaaggatcattacacgccggagaaaatccgcagcatgtatggccacaacgagatcaac
atcaacctgccgacgccgctcccggtcaacatcacctaccagaccgcgttcgtggacgac
gccggcaagctcgaattccgcaaggacatctatggccgcgatgcgaccatgatcaaactg
ctgaaggaaggcggccgccgcaacctcgaaaccgtcgtcgcgcattcgcagccgaactac
gtacggcccaccggcaacatcaatattccgggcgacggctacgcggaccgctcctcggca
ccgaatttcttccagatgctgttcggcggcgggggccgcgcggaggccgagccggaaccc
cgttcccgccgccgctcctaccgttag
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