Afipia carboxydohydrogena: AFIC_001068
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Entry
AFIC_001068 CDS
T08963
Name
(GenBank) ABC transporter ATP-binding protein/permease
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
AFIC_001068
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcax02000
]
AFIC_001068
Enzymes [BR:
pcax01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
AFIC_001068
Transporters [BR:
pcax02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
AFIC_001068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_29
AAA_16
AAA_5
RsgA_GTPase
AAA_30
AAA_21
ABC_ATPase
cobW
TgpA_N
Motif
Other DBs
NCBI-ProteinID:
WEF52573
LinkDB
All DBs
Position
complement(1110351..1112153)
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AA seq
600 aa
AA seq
DB search
MSKVPRKITDDPYGAADLIKRLVAEQGLAYWRRYAVAFGMMGLSAAATAGSAYLLGQVIN
QAYVNRSISGIVTLSAIIIALFTIKGAATYGQAVIMSRISNAILANNQRRLFAKLMRENL
TFYSERHSSEFLARLSTGASAVTQVLALLVTSLGRDFLSLIGLLVVMVVQDPIMSLLSFV
VAPPAFLFIRKLVKRIRGLAHDQFTGTTDIMETVQESLQGIRTVKAFTLEDAMQARINKS
IADVENYSNKMARVSNRSGPLMEMLGGIAIAGALMYGGYRVIATNAAPGQFVSFITAFLL
AYEPAKRLARLNIDLNGLLIGARKLLEIIDSPASEPSDDDKPPLQLTQGRVELRDVTFSY
RDDEPVLKRMSFVAEPGQTTALVGPSGGGKSTVLALLLRLYEVDRGAIVIDNQIISDCSR
ASLRQQTAYVGQDVYLFRGTVRENIAFGHVGATEDEIVAAAKAAFAHDFIMGFPQGYDTP
VGEHGTQLSGGQRQRIAIARALIKNAPIILLDEATAALDSESEKYVQEAIGHLCRGRTTI
VIAHRLHTIMHADNILVIESGEIVETGQHDALLRANGRYASFFRLQQREEDNVTPLAANA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggttccccgcaaaatcaccgatgacccctatggcgcagccgacctgatcaag
cggctggtggccgaacagggcctcgcctactggcggcgctatgcggtcgccttcggcatg
atgggattgtccgcggccgcgaccgccggctcggcctatctgctcgggcaggtcatcaac
caggcctacgtcaaccgcagcatctcgggcatcgtcaccctgtccgcgatcatcatcgcg
ctgttcacgatcaagggtgccgcgacctacgggcaggccgtgatcatgtcgcggatcagc
aacgccattctcgccaacaaccagcgcagattattcgccaagctgatgcgcgagaacctg
acattctattcggagcgtcactcctccgaatttctcgcccgcctctcgaccggcgcatcc
gccgtcacgcaggtgctggcactcctcgtcacatcgctcgggcgcgacttcctgtcgttg
atcggccttctggtggtgatggtcgtgcaggacccgatcatgtcgctgctgagcttcgtg
gtggcgccaccggcgttcctgttcatccgcaagctcgtcaagcgcatccgtggccttgcg
cacgaccagttcaccggcaccacggacatcatggagacggtgcaggagtcgctacagggc
atccgcaccgtgaaggccttcacgctcgaggacgcgatgcaggcccgcatcaacaagagc
atcgccgacgtcgaaaactattccaacaagatggcgcgggtctccaatcgctccggtccg
ctgatggaaatgctgggcggcatcgccatcgccggagcgctgatgtatggcggctatcgc
gtgatcgcgaccaacgccgcccccggccagttcgtctccttcatcaccgccttcctgctc
gcctatgagcccgccaagcggctcgcacgcctcaacatcgacctcaacggtctcctgatc
ggcgcgcgcaaactgctggaaatcatcgacagccccgcctccgagcccagcgacgacgac
aagccgccgctgcaactcacgcaaggccgcgtcgaactgcgcgacgtgactttctcctat
cgcgacgacgagccggtgctgaagcgaatgagcttcgtcgcggagcccggccagaccacg
gcgctggtcggcccctcgggcggcggcaagtccacggtactggcgctgctgctgcggctt
tatgaagtggatcgcggcgccatcgtcatcgacaaccagatcatctccgactgctcgcgc
gcctcattgcgccagcagaccgcctatgtcgggcaggacgtctatttgtttcgtggcacc
gtgcgcgaaaacatcgccttcggccacgtcggcgcgaccgaggacgagatcgtcgccgcc
gccaaggccgcgttcgcgcacgatttcatcatgggcttcccgcagggctacgacaccccg
gtcggcgagcacggcacgcaactgtcgggcggccagcgccagcgcatcgccatcgcccgc
gcgctcatcaagaacgcgccgatcatcctgctggacgaagccaccgccgcgctggattcg
gaatcggagaaatacgtgcaggaggcgatcggccacctctgccggggccgcaccaccatc
gtcatcgcgcatcgcctgcacaccatcatgcatgccgacaacattctggtgatcgaaagc
ggcgagatcgtcgagaccggccagcatgacgccctgctgcgcgcgaacgggcgctacgcc
tcgttcttccgcctgcaacagcgcgaggaagacaacgtcacgccactcgccgccaacgcc
tag
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