Pseudomonas carboxydohydrogena: AFIC_001074
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Entry
AFIC_001074 CDS
T08963
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax00541
Biosynthesis of various nucleotide sugars
pcax01100
Metabolic pathways
pcax01250
Biosynthesis of nucleotide sugars
Module
pcax_M00064
ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
AFIC_001074 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pcax01005
]
AFIC_001074 (rfaD)
Enzymes [BR:
pcax01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
AFIC_001074 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pcax01005
]
Core region
AFIC_001074 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
KR
Motif
Other DBs
NCBI-ProteinID:
WEF52579
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All DBs
Position
1116814..1117794
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AA seq
326 aa
AA seq
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MFLVTGGAGFIGSNIVAALNEAGHADVVVSDFLGDEGKWRNLAKRQIADIVPPDELMAWL
RGRRLTGVIHMGAISATTATDGDHVFETNYRLSVRLLDWCTLNPTPFIYASSAATYGDGE
QGFRDDNSLDALKALRPMNLYGWSKYLFDVAVATRVAKGEKLPPQWAGLKFFNVFGPNEY
HKGAMMSVLTKTFDDIKAGKTIRLFKSHRDGIADGDQRRDFIYIDDVLRVVMWLVQTPSV
SGIFNVGTSHARSFRDLIVSAYAALGAKENIEYVDMPEQIRGSYQYFTQADGEHLRRAGY
NGGFTSLEDSVASYVKTYLDRPDRYR
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtttctggtgaccgggggcgcagggtttatcggctccaacatcgtcgcggccctgaac
gaggctggccacgcggatgtcgtggtctcggattttctcggcgacgagggcaagtggcgc
aacctcgccaagcggcagatcgccgacatcgtaccaccggatgaactgatggcgtggctg
cgcgggcgcaggctcaccggcgtcatccacatgggcgcgatttccgcgaccaccgcgacc
gacggcgaccatgtgttcgagaccaattaccgcttgtcggtgcggctgctcgactggtgc
acgctcaaccccacgcccttcatctatgcctcctcggccgcgacctatggcgacggcgag
cagggcttccgcgacgacaacagcctcgatgcgctgaaagcgctgcggccgatgaacctc
tacggctggagcaagtacctgttcgacgtcgcggtggcgacgcgggtggcgaaaggcgag
aagctgccgccgcaatgggcgggcttgaagttcttcaacgtgttcggcccgaacgaatac
cacaagggcgcgatgatgagcgtgctgaccaagaccttcgacgacatcaaggcgggaaag
accatccgtctgttcaagtcgcatcgcgacggcatcgcggatggcgaccagcggcgcgac
ttcatctacatcgacgatgtgctgcgcgtcgtgatgtggctggtgcaaactcccagcgtc
agcggcatcttcaatgtcggcaccagccatgcgcgcagcttccgcgacctgatcgtgtcg
gcctatgcggcgctcggcgccaaagagaacatcgaatatgtcgacatgcccgagcagatt
cgcggcagctaccagtatttcacgcaggccgatggcgagcatctgcgccgcgccggatat
aatggcggcttcacgtcgctcgaggattcggttgcctcttacgtgaagacttatctcgat
cgtccggatcgttatcgttga
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