Afipia carboxydohydrogena: AFIC_001316
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Entry
AFIC_001316 CDS
T08963
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFIC_001316 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcax03021
]
AFIC_001316 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_001316 (rpoC)
Enzymes [BR:
pcax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFIC_001316 (rpoC)
Transcription machinery [BR:
pcax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFIC_001316 (rpoC)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFIC_001316 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WEF53109
UniProt:
A0ABY8BSZ0
LinkDB
All DBs
Position
1344496..1348686
Genome browser
AA seq
1396 aa
AA seq
DB search
MNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGP
IKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRI
GLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEEEYLKAQDEYGQDSFTAMIGAE
AIRELLRGLDLEKLEAQLRADMAETDSDIKHKKFAKRLKIVEAFRNSGNKPEWMILTVVP
VIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQEAV
DALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKL
HQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIREHPVLL
NRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVL
MMSTNNILHPANGQPIIVPSQDIVLGLYYLSILREGLAGEGKVYRDMAEIEHALFSKVIH
LHTKIKYRWNGVGEDNKPISKIYETTAGRVMLGQVLPKHPKVPFDAVNKLMTKREISGVI
DTVYRHCGQKETVIFCDRIMALGFHNAFKAGISFGKDDMVVPHGKWKVVDDTRSMAKEFE
QQYNDGLITQGEKYNKVVDAWSKATEKIADEMMKEISSVKKNPKGGEAQINSIYMMAHSG
ARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCIINATDCGTNLGIKMRAIVDAGTVVASLGSRILGRTAGEDIR
EPSTNKVIVKRGTLMEESHVDAIQRGGVQEVKIRSALTCELVNGICAMCYGRDLARGTPV
NHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINQQSFVESNFDGKIVIRNKAIATNSE
GAKVAMVRNMVVAIVDADGTERATHRIQYGSRMWVDEGDMVKRGQRIAEWDPYTRPILTE
VEGTIGFEDLVEGQSISETLDESTGIAKRIVIDWRSTSRGADLRPAIVVKGKDGKVLKLA
RGGDARYMLSVDAILSVDVGATVKPGDILARISTESAKTRDITGGLPRVAELFEARKPKD
AAIIAETAGTIRFGRDYKNKRRLSIEPTDKTEEPREYLIPKGKHIHLQDGDIVEKGDFIV
EGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITDQGD
TDMISGEQVDKIEFDQNNAKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQETTRV
LTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVATKRDKLILDEREKQAAIAT
PPAAPESEPLALPPAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaacccgacgacgccggcccaggtcttcgaccagatccggatttcgatc
gcgtcgccggagaagattctgtcgtggtcgtacggcgagatcaaaaagccggaaaccatc
aactaccgcacgttcaagcctgagcgtgacggcctgttctgcgcgcgcatcttcgggccg
atcaaggattacgagtgcttgtgcggcaagtacaagcggatgaagtacaagggtatcatc
tgcgaaaagtgctcggtcgaagtcacgctgtcgcgcgtccggcgcgagcgcatgggccac
atcgaactggctgcgccggttgcgcacatctggttcctgaagtcgctgccgagccgcatc
ggccttctgctcgacatgacgctgaaggacctcgagcggattctgtacttcgaatattac
gtcgtgcttgagccgggcctcaccgcgctcaaggaccgtcagctcctgtccgaagaagag
tatctgaaggcgcaggacgaatacggccaggattccttcaccgcgatgatcggtgcggaa
gcgatccgcgagctgctgcggggtctcgacctcgagaagctcgaggcgcagttgcgcgcc
gacatggcggaaaccgactccgacatcaagcacaagaagttcgccaagcgcctgaagatc
gtcgaggccttccgcaactcgggcaacaagccggagtggatgatcctcacggtcgtgccg
gtgattccgccggacctgcgtccgctggtaccgctcgacggcggccgcttcgcgacctcc
gatctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaagcggctgatg
gagctgcgcgcgccggatatcatcatccgcaacgaaaagcgcatgttgcaggaagctgtg
gacgcgctgttcgacaacggccgccgtggccgcgtcatcaccggcgccaataagcgtccg
ctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctc
ggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggtcccgaactcaagctg
catcagtgcggcctgccgaagaagatggcgctcgaactgttcaagccgttcatctactcg
cggctcgacgccaagggtctgtccaccaccgtgaagcaggcgaagaagctcgtcgagaag
gagcgtcccgaggtctgggatatcctcgacgaagtcattcgcgagcatccggtgctgctg
aaccgcgcgccgacgctgcatcgcctcggcattcaggcattcgagccgacgctgatcgag
ggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaacgccgacttcgacggc
gaccagatggccgtgcacgttccgctgtcgcttgaagcacagctggaagcgcgcgtgctg
atgatgtcgaccaacaacatcctgcacccggcgaatggtcagccgatcatcgtgccgtcg
caggacatcgtgcttggtctttattatctctctatcctgcgcgaaggcctcgccggcgaa
ggcaaggtctaccgcgacatggcggagatcgagcacgcgctgttctcgaaggtcatccac
ctgcatacgaagatcaagtatcggtggaatggggtcggcgaggacaacaagccgatctcg
aagatctacgagaccaccgccggccgcgtcatgctcggtcaggtgctgccgaagcatccg
aaggttccgttcgacgccgtcaacaagctgatgacgaagcgcgaaatctcgggcgtgatc
gacacggtgtatcgtcactgcggccagaaggagactgtgatcttctgcgatcgcatcatg
gcgctcggcttccacaacgccttcaaggcgggcatctcgttcggcaaggacgacatggtc
gtgccgcacggcaagtggaaggtcgtggacgacacccgctcgatggcgaaggaattcgag
cagcagtacaatgacggcctgatcactcagggcgaaaagtacaacaaggtggtcgacgcc
tggtccaaggccacggagaagatcgctgacgagatgatgaaggaaatctcgtcggtgaag
aagaatccgaagggcggcgaggctcagatcaactcgatctacatgatggctcactccggt
gcgcgtggttcgccggcgcagatgcgccagttggccggcatgcgcggcctgatggccaag
ccgtcgggcgagatcatcgagacgccgatcatttccaacttcaaggaaggtctgtcggtt
ctcgaatacttcaactcgacccacggcgcccgcaagggtctcgcggacaccgcgttgaag
accgcgaactccggttacctcacccgccgtctggtcgacgtggcgcaggattgcatcatc
aatgcaaccgactgcggcaccaatctcggcatcaagatgcgggcgatcgtggacgccggc
accgtggtggcttcgctcggctcacgcatccttggccgcaccgcgggcgaggatatccgc
gagccgtcgaccaacaaggtcatcgtcaagcgcggcactctgatggaggagagccacgtc
gatgccatccagcgcggtggtgtgcaggaggtgaaaatccgctccgcactgacctgcgaa
ctggtcaacggcatctgcgcgatgtgctacggccgcgacctcgcgcgcggcacgccggtc
aaccacggtgaagctgtcggcgtcatcgccgcgcagtcgatcggtgagccgggcacgcag
ctcacgatgcgtacgttccacatcggcggcgctgcgcagatcaaccagcagtcgttcgtc
gagtcgaacttcgacggcaagatcgtcatcaggaacaaggcgatcgctaccaactcggaa
ggcgccaaggtcgcgatggtccgcaacatggttgttgcgatcgtcgatgccgatggcacc
gagcgcgcgacccatcgtatccagtacggctcgcgcatgtgggtcgacgagggcgatatg
gtcaagcgcggccagcgcatcgcggagtgggacccgtatacccgtcccattctcaccgaa
gtcgagggcaccatcgggttcgaggatctggtcgaaggccagtcgatctccgagacgctc
gacgagtcgaccggtatcgccaagcgcatcgtcatcgactggcgctcgaccagccgtggt
gcggatttgcgtccggccatcgtggtcaagggcaaggacggcaaggtgctgaagctcgcg
cgtggcggcgatgcccgctacatgctgtcggttgacgccatcctctcggtggacgtcggc
gcgacggtgaagccgggcgacatccttgcgcgtatctcgaccgagagcgccaagacccgc
gacatcacgggcggtctgccgcgcgtggccgaactgttcgaagcccgcaagccgaaggac
gccgcgatcatcgcggagaccgccggcacgatccgcttcggacgggattacaagaacaag
cgccgcctctcgatcgagccgaccgacaagaccgaggagccgcgcgagtacctgatcccg
aagggcaagcacatccacttgcaggacggcgacatcgtcgaaaagggcgatttcatcgtc
gagggcaatccggcgccgcacgacattctggcgatcaagggcatcgaggaactcgctgcc
tatctggtcaacgaaatccaggaagtttaccggctccagggcgtgctcatcaacgacaag
cacatcgaggtgattgtccgtcagatgttgcagaaggtggagatcaccgaccagggcgac
accgacatgatctcgggcgaacaggtcgacaagatcgagttcgaccagaacaacgccaag
gcgaaggaagagggcaagaagcccgcgaccggaaccccggtgctgctcggcatcaccaag
gcctcgttgcagacccgctcgttcttctcggcggcgtcgttccaggagaccacccgcgtg
ctcaccgaagccgccgtcaacggcaaggtggacccgctcgagggcctcaaggagaacgtc
atcgtcggtcgcctgatcccggcgggcaccggcgcctcgatggccaagatccgcgaagtc
gcgaccaagcgcgacaagctgatcctggacgagcgcgagaagcaggcggcgatcgcgacg
cctccggccgcgccggaaagcgagccgctggcattgccgccggcggagtaa
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