Pseudomonas carboxydohydrogena: AFIC_001378
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Entry
AFIC_001378 CDS
T08963
Name
(GenBank) DNA photolyase family protein
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_001378
Enzymes [BR:
pcax01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
AFIC_001378
DNA repair and recombination proteins [BR:
pcax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
AFIC_001378
Prokaryotic type
AFIC_001378
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Usp
Motif
Other DBs
NCBI-ProteinID:
WEF52871
LinkDB
All DBs
Position
complement(1398089..1399543)
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AA seq
484 aa
AA seq
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MNVSSPVIVWFRDDLRLSDHAALIAARDAGATLICLYILDDTETGKHGHRSPGAAAKWWL
ANSLRALDADLKELGQHLVLRKGDAREILPQLARETRAKAVFWIDSEIPADTACARDVAK
TLNEIGVETHVSASDLLASPQSIRNKEGNGLRVFTPFWKRVRAQGQPPRPLAAIKKLPTP
VTSLKNESLKDWQLEPARPDWAGGFRETWTPGETGAHERLHDFLDGAIKGYAEGRDFPEK
DHASHLSPHLRFGEISPRQVFHAARFAAERHPALSRDVEKFLSELGWREFCRHLLFDHPD
LHRRNLQSAFDDFPWRRDTKALRAWQQGRTGYPIVDAGMRELWHTGAMQNRIRMVTASFL
VKHLLLDWRDGEKWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKFDPD
GAYVAHWVPELAKLPPPLIHKPWEATPMELAAAGVTLGKTYPAPIVDHKAARERALAAYR
KTRD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtatcctcgcccgtcatcgtctggtttcgcgacgatctgcgcctgtccgatcat
gccgcgctgatcgcggcacgggatgcgggggcgacgctgatctgtctttatatcctcgac
gatacggagaccggaaagcacggtcaccgctcgcccggcgcagccgcgaaatggtggctg
gcgaattcgctgcgcgcgctggatgcggacctgaaagagctcggccagcaccttgtactg
cgcaagggcgatgcgcgtgagattctgccgcagcttgcgcgcgagacacgtgcaaaggcg
gtgttctggatcgacagcgagatcccggcggatactgcatgcgcccgcgacgtcgccaag
actctgaatgagatcggtgtcgagacgcatgtcagcgcgagcgatctgctcgcgtctccg
caaagcatccgcaacaaggaaggcaacggccttcgcgtgttcacgccgttctggaagcgc
gtgcgggcgcaaggccagccgccccgcccgctcgccgcgatcaagaaactgccgacgcct
gtgacatcgctcaagaacgagagtttgaaagactggcaactcgaacccgcgcgccccgac
tgggcgggcggcttcagggaaacatggacgccgggagagactggcgcgcacgagcggctg
cacgattttctcgacggcgcgatcaagggctatgccgagggccgcgattttccggaaaag
gatcacgcctcgcatctgtcgccgcatctgcggttcggcgaaatctcgccgcgacaggtt
ttccatgccgcgcgcttcgccgccgaacgacatcccgcgctgtcccgcgacgtagagaaa
ttcctgtccgaactcggctggcgggaattctgccgccacctgctgttcgatcatcccgat
ctgcaccggcgcaatctgcaatccgcgttcgacgattttccgtggcggcgcgatacgaaa
gcgttgcgcgcatggcagcaaggccgcaccggctatcccatcgtcgatgcgggcatgcgc
gagctttggcataccggcgctatgcagaaccgcatccgcatggtgacggcgtcgtttctg
gtgaagcatctcctgctcgactggcgcgacggcgaaaaatggttctgggatacgctggtc
gatgccgaccccggcagtaatcccggcaactggcaatgggtcgcgggctgcggcgcggat
gcggcaccctacttccgcatcttcaatccgattttacagggcgagaaattcgatccggac
ggcgcctatgtcgcgcactgggtgccggagcttgcgaagctgccgcctccgctgatccac
aagccctgggaggcaacgccgatggagcttgcagccgctggcgtcacgctcggcaagacg
tatcccgcgccgatcgtcgatcacaaggccgcgcgcgaacgcgcgctggcggcctatcgt
aaaacgcgagactag
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