Afipia carboxydohydrogena: AFIC_001579
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Entry
AFIC_001579 CDS
T08963
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcax
Afipia carboxydohydrogena
Pathway
pcax03030
DNA replication
pcax03430
Mismatch repair
pcax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFIC_001579 (dnaE)
03430 Mismatch repair
AFIC_001579 (dnaE)
03440 Homologous recombination
AFIC_001579 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcax03032
]
AFIC_001579 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_001579 (dnaE)
Enzymes [BR:
pcax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFIC_001579 (dnaE)
DNA replication proteins [BR:
pcax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFIC_001579 (dnaE)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFIC_001579 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
HROB
DUF655
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
WEF53057
LinkDB
All DBs
Position
1595331..1598798
Genome browser
AA seq
1155 aa
AA seq
DB search
MASPGFIHLHVHSAYSLLQGAMKIPKLAELAKADHQPALALTDRDNMFGALEFSEKLASS
GIQPIVGCALAIDFGDVDPNARNAQALGPARIVMLAANEEGYRSLMRLNSRAFLDMPAQQ
IPHVKADWLKDDTSGLIALTGGPEGPVSQALLAEQPELALQRVEALAGLFGDRLYLELQR
HGLDTERRIESALIDIAYGKGLPLVATNEPYFATADDYESHDALLCIAGGRLIAETERAH
LTPDHRFKTRAEMAVLFADLPEALASTVEIARRCAFRPKTRKPILPHFTVSEHHEDPSAA
EAAELQRQAEEGLAHRIEKHGMAEGQTEEDYRTRLAFELDVIRRMKYPGYFLIVSDFIKW
AKAQGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDR
RGEVIHYVQERYGRDQVGQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAP
VTLAAAIAGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRPLSELVPM
YRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHVDLAHLPLDD
KPTYEMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARK
HGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEM
EKQRVRFVSGSVEHSISKGQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHYPV
EFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGGNTIFYSLAALKGV
GSQAVEMIVEARKNGGPFTSLADFAARVPPRAINKRVLESLAAAGVFDEFNPNRAAVFAG
ADAILAACQRANDAVTLGQSDMFGGQSGAPTLILPNVEPWLPAERLQREYGAVGFFLSGH
PLDDYKVVLQRLSVQSWAEFSSAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPT
GHFEAVLFSEALGQFRDMLEPGLVVLLQLAAELQGEDVRARINNVELLDQAAAKTPMALK
IFVRDDKPVESIRRRLEDHAQGAAARSGSAGEVTVVMMLDLETEVDMKLPGRFKVSPQIA
GALKAISGVVDVQTL
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccggatttatccatcttcatgtccactcggcgtattcgctgttgcagggg
gcgatgaagattcccaagctcgccgagcttgcgaaggcggaccatcagccggcactggcg
ctgaccgaccgcgacaacatgttcggcgcgctggaattctccgagaaacttgcgagctca
gggattcagccgatcgtcggctgcgcgctcgccattgatttcggcgacgtcgatccgaac
gcgcgcaacgcgcaggcgctcggcccggcgcgcatcgtgatgctggccgcgaacgaggag
ggttaccgtagcctgatgcggctcaactcgcgtgccttcctcgacatgcccgcgcagcag
atcccgcacgtcaaggcagactggcttaaggacgacaccagcggcctgatcgcgctgaca
ggcgggccggagggtccggtgtcgcaagcgcttctcgccgagcagccggaactggcgttg
caacgggtggaggcgctggcgggcctgttcggcgaccgcctctatctcgaactgcaacgc
catgggctcgacaccgagcggcgcatcgagagcgcgttgatcgatatcgcctacggcaag
ggcctgccgctggtcgcgaccaacgagccgtatttcgccaccgccgacgattacgaatcc
cacgatgcgctgctgtgcatcgcgggcgggcggctgatcgcggaaaccgagcgcgcgcat
ctcacgccggaccaccgcttcaagactcgcgccgagatggccgtgctgttcgccgatctg
cccgaggcgctggcgtccacggtcgagatcgcgcggcgttgcgcgttccgcccgaaaaca
cgcaagccgatcctgccgcactttaccgtcagtgagcatcacgaagacccgtccgccgcc
gaggcggccgagttgcagcggcaggccgaggaggggctggcgcaccggatcgaaaagcac
gggatggcggaggggcagaccgaggaggactatcgcacgcgcctcgccttcgaactcgat
gtcatcaggcggatgaaatatccggggtacttcctgatcgtgtccgacttcatcaagtgg
gcgaaggcgcagggcattccggtcgggccggggcgcggctccggcgcgggctcgctggtg
gcctatgcgctgaccatcaccgatctcgatccgctgcgtttcggcctgctgttcgaacgc
ttcctcaaccccgagcgcgtgtcgatgccggacttcgacatcgacttctgtcaggatcgc
cgcggcgaggtgatccattacgtgcaggagcgctatggccgcgatcaggtcggccagatc
atcaccttcggcaccttgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtgttgcag
atgccatatgggcaggtcgacaagctcaccaagctggtgccgcagaatcccgccgcgccc
gtgaccctcgcagccgccatcgcgggcgagcccaagctgcaagccttccgcgacgaggac
ccggtggtggcgcgcgcgttcgacatcgccatgcgcctcgagggcctgacgcgtcacgcc
tcgacccacgcggcgggcatcgtgatcggcgaccggccgctgtccgaacttgtgccgatg
taccgcgatccgaaatccgacatgccggtgacccagttcaatatgaaatgggtcgagcct
gcgggcctcgtgaagttcgacttcctcggcctcaagacgctgacggtactcgacgtcgcg
gtgaaacttttgaagcagcgcgacatccatgtcgatcttgcgcacctgccgctcgacgac
aagccgacctacgagatgctgacgcgcggcgacgtggtcggcgtgttccaggttgaaagt
cagggcatgcgccgcgcgctggtcgatatgcggcccgaccgtttcgaggacatcatcgcg
ctggtcgcgctctatcgtcccggcccgatggcgaacatcccgacctattgtgcgcgcaag
cacggcgacgaggagccggaatatctgcatccggtgctggagccgattttgaaggagacg
ttcggcgtcatcatctatcaggaacaggtgatgcagatcgcgcaggtgatggcgggctac
tcgctcggcgaagccgacctcctgcgccgcgcgatgggcaagaagattcgcgccgagatg
gaaaagcagcgcgtgcgcttcgtctccggttcggtcgaacacagcatcagcaaggggcag
gccgaccagattttcgagctgctggcgaaattcgccgactacggcttcaacaagagccat
gccgccgcctacgcgctggtgtcgtaccagaccgcttacatgaaagcgcattatccggtg
gagttcatcgccgcgtcgatgacgctcgacaccggcaacaccgacaagctgtccgaattc
cgcgccgaggcgcagcggctcggcatcaaggtggagccgccgtcgatcaatcgctcggag
ggcaccttcaccgtcggcggcaacaccatcttctactcgctcgcggcgctgaagggcgtg
ggttcgcaggctgtcgagatgatcgtggaggcgcgcaagaacggcgggccgttcacctcg
ctcgcggatttcgccgcgcgcgttccgccgcgcgcgatcaacaagcgcgtgctggaaagc
cttgccgccgctggtgtgttcgacgaattcaacccgaaccgcgcggcggtgtttgcgggc
gccgacgcgatcctcgctgcctgccagcgcgcgaatgacgcggtgacgctcgggcagagc
gatatgttcggcggacagagcggtgcgccgacgctgatcctgccgaatgtcgagccgtgg
ttgcccgccgaacggctgcaacgcgaatacggcgcggtcggattcttcctgtccggccat
ccgctcgacgattacaaggtcgtgttgcagcgtctcagcgtgcagtcgtgggcggagttc
tccagcgcggtgaagaacgggcgcacggcgggaaaggttgccgccaccgtggtgtcgcgc
atggagcgccgtaccaagaccggcaacaagatgggcatcatcggcctgtccgatccgacc
ggacatttcgaggcggtgctgttttccgaggcgctcggccagttccgcgacatgctggaa
ccggggctcgtggtgctgttgcagcttgccgccgaattgcagggcgaggacgtacgcgcc
cgcatcaacaatgtcgaactgctcgatcaggcagccgcgaaaacgccgatggcgctcaag
atattcgtgcgcgacgacaagccggtcgaatcgatccgccgccgtctggaggatcatgcg
cagggggcagccgcacgctcgggcagcgcgggcgaagtcacggtggtgatgatgctcgac
ctcgaaaccgaggtggacatgaagctgcccggccgcttcaaggtgtcgccgcagatcgcg
ggcgcgctgaaggcgatctccggcgtggtggatgtgcagacgctgtaa
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