Pseudomonas carboxydohydrogena: AFIC_001809
Help
Entry
AFIC_001809 CDS
T08963
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pcax
Pseudomonas carboxydohydrogena
Pathway
pcax03410
Base excision repair
pcax03430
Mismatch repair
pcax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFIC_001809 (recJ)
03430 Mismatch repair
AFIC_001809 (recJ)
03440 Homologous recombination
AFIC_001809 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcax03400
]
AFIC_001809 (recJ)
DNA repair and recombination proteins [BR:
pcax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AFIC_001809 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AFIC_001809 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFIC_001809 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
WEF50277
LinkDB
All DBs
Position
complement(1857281..1859122)
Genome browser
AA seq
613 aa
AA seq
DB search
MTPPATALPVETPHAFLGVTRSATGKLWRDRLDARGAAQALAIAQRYQLPEMLARIIAGR
GIDIDAVEDFLDPTIRKLLPDPSTVTQMEAAAKRIADAATRGERVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVEAIRSLSSRGAKLLVTVDCGTTSLEPLAEAR
KLGMDVVVIDHHQCGDELPIVNAIVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRN
FWTPERPEPNLLDMLHHVALGTVADVAPLLGLNRAFVAKGLVAMRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRINAGGRIGQADLGVKLLLEGDVSEAARIAAELDRLNIERRLIE
QAAVEQAEAEALASLGLEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAVALEPGG
IGTGSGRSIAGVDLGKAVREAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEQTLAAD
VAKARHVDELFIDGAVSARAVTTDFVATLNRAGPFGTGNPEPVIALPSHQLVYADEVGGA
HFRVRLKSGDGAIVNGIAFRSVGQKLGNALADNRGQMVHVAGSLSIDRWQGAERVQLRIS
DIAVPEREPVSIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctcccgccaccgcattgcccgtcgagacgccgcacgcctttctcggcgtgacg
cgctcggccacgggcaaattgtggcgcgaccggctggacgcgcgcggcgcggcgcaggca
cttgccatcgcgcagcgttatcaattgccggaaatgctggcgcgcatcatcgccgggcgc
ggcatcgatatcgacgcggtcgaggattttctcgatccgaccatccgcaaattgctgccc
gatccctcgaccgtgacgcagatggaggcggccgccaagcgcatcgcggatgcggcgacg
cgcggcgagagggtcgcgatcttcggcgattacgatgtggacggcgcgacctcggcggcg
ctgctggcatggcatctgcgccattgcgggctcgatccgctgatccacattcccgaccgg
attttcgaaggctatggcccgaacgtggaggcgatccgctcgctgtcgtcacgcggcgcg
aagctgctggtcacggtcgattgcggtaccacgagccttgagccgctcgcggaagcacgc
aagcttggcatggatgtggtggtgatcgatcatcatcaatgcggcgatgaactgcccatc
gtcaacgccatcgtcaatccgaaccggccggacgatctgtccgggctcggccatctcgcg
gcggtcggccttgtgttcgtgacgctggtggcggtgaaccgcgaattgcgtgtgcgtaat
ttctggacgcccgagcggccggagccgaacctcctcgacatgctgcatcacgtcgcgctc
ggcacggtcgcggacgtggcgccgctcctggggctgaaccgtgccttcgtcgccaagggg
ctggtcgcgatgcgccgccgcgatcatgtcggccataccgcgttgatggatgttgcgcgt
ctcaatggcccgccggaggcatggcacctgggcttcatgctcgggccgcgtatcaacgcc
ggcggccgcatcgggcaggccgatctcggagtgaaactgctgctggaaggcgacgtgtcg
gaagcagcaaggatcgccgccgaactcgatcgcctcaacatcgagcggcggctgatcgaa
caggcggccgtcgagcaggccgaggccgaggcgctggcctcgctcgggctggaggacaag
ggatcggtgatcgtcacggcgtccgagggctggcatccgggcgtggtcggtctcgtggcg
tcgcgtctgaaagagaaattctcacggcctgccttcgcggtggcgctggagccgggcggc
atcggtaccggttcgggccgctccatcgcgggcgtcgatctcggcaaggcggtgcgggaa
gccgtgtccgaaggtctgctcatgaaaggcggcggccacgccatggcggcgggcgtgacc
ttgaagaaggatcgcctcgcagaattccgcgcctatctcgaacagacgctggctgcggat
gtggccaaggcgcggcatgtcgatgaactgttcatcgacggcgcggtgagcgcgcgcgcc
gtcactaccgatttcgtcgcgacgctcaatcgtgccgggccgttcggtaccggcaatccg
gagccggtgatcgcgctgccgtcgcatcaactcgtctatgccgacgaggtcggcggcgcg
catttccgcgtgcggctgaagtccggcgacggcgccatcgtcaacggcatcgcgttccgc
tcggtcggccagaaactcggcaacgcgctcgccgacaatcgcgggcagatggttcatgtt
gccggatcgctcagcatcgaccgctggcagggcgcggagcgggtgcagttacggatttcc
gacatcgccgtgccggagcgcgaaccggtttcgatcaggtag
DBGET
integrated database retrieval system
