Pseudomonas carboxydohydrogena: AFIC_002777
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Entry
AFIC_002777 CDS
T08963
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcax03009
]
AFIC_002777
Enzymes [BR:
pcax01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
AFIC_002777
Ribosome biogenesis [BR:
pcax03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AFIC_002777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
WEF51203
LinkDB
All DBs
Position
complement(2868309..2870363)
Genome browser
AA seq
684 aa
AA seq
DB search
MPRDNDKNNRSGSGSRGRPPGRGRDGESKGRGRFGDERPARSSAPRGERKFSDKKFGDKK
PGGRSFGEKRPYAAKGEGFRKDGDRPRPRFDRDDRPARGERSEGRSFKPREDRGDRPARG
PRKEFGPRKEFGAGNRGEGRSFKPREDRAPRGERSDARPSRSGGYGDKKFGDKKFGEKRS
YTPRGEGFRNDGPRGESRPARFSRDDRPQRDERPRFNRDERGPSRGPRKDFGDRNDRSNE
KPWEKRAPRRDDRGASDRPRFSRSREDRPEGGERFERKREGFGRPRFERDGEDRAPRRNA
WQEHPRNEGGERPRRDNEDDSKIFAKRPAFGGRGAYRERPAESDKRAPRAKPNKDKTGER
IAKAVARAGLCSRRDAEEWITQGRVAVNGRVINSPALDVTVRDVITIDGKPLPERERTRL
FLYHKPRGLMTTHDDPEGRPTVFDHLPEGLPRLISIGRLDFNTEGLLLLTNDGGLSRALE
HPDTGWLRRYRVRAHGEVTQAQLDELKNGVEVDGVKYGSIDATLERDQGANVWVTFAIRE
GKNREVRNVMAHLGLEVNRLIRVSYGPFQLGEIPEGQVEEIKSRVLREQLGDKIVALSGA
QFDKPAREDEGPKVGRDGTPLRSKADNKKIKRSKIEDRKGRTVVVQRTGSDEKRARNEAE
ANGYGPPRKAKRGYHGKRDLKPKD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgacaacgataaaaacaacagaagcggctccggctcgcgcggccgtcccccg
ggacgtggccgcgacggggagagcaagggcaggggtcgctttggcgacgagcggcccgcg
cgctcatccgcgcctcgcggcgagcggaagttcagtgacaagaagttcggcgacaaaaaa
ccgggcgggcgcagcttcggtgagaagcggccttatgcggccaaaggcgagggtttccgc
aaggacggcgaccgcccgcgtccgcgttttgaccgggatgatcgtcccgcgcgtggcgag
aggagcgaaggccgctcgttcaagccgcgcgaagaccgcggggatcgtccggcccgtggt
ccgcgcaaggagtttggtccgcgcaaggaattcggcgcaggtaatcgcggcgaagggcgt
tcgttcaagccgcgcgaagaccgtgcgccgcgtggcgagcgcagcgatgcgcgccccagc
cgctccggtggatacggcgacaagaaattcggtgacaagaagttcggtgagaagcggtcg
tacaccccgcgcggcgaaggtttccgcaatgacggcccgcgcggtgaatcgcgccccgcg
cgcttcagtcgcgatgatcgcccgcagcgtgacgaacgcccgcgtttcaaccgtgatgag
cggggaccgtctcgcggcccgcgcaaggatttcggcgatcgcaacgatcgcagcaacgag
aagccgtgggagaagcgcgcgccgcgtcgcgacgatcgcggagcaagtgaccgcccgcgt
ttttcgcgctcgcgtgaggatcgcccggaaggcggcgagcggttcgagcgtaagcgcgag
gggtttggccgcccgcgcttcgagcgtgacggcgaggaccgcgccccccgccgcaacgcc
tggcaggagcatccgcgcaacgaaggtggcgagcgcccgcgccgcgacaacgaggacgat
tcgaaaatcttcgccaagcgtccggcgttcggcggccgtggcgcctatcgcgagcggcct
gcggagtcggacaagcgcgcgccgcgcgccaagccgaacaaggacaagaccggcgagcgc
atcgccaaggccgtcgcgcgcgcgggactgtgctcgcggcgcgatgcggaggaatggatc
acgcaggggcgcgtcgccgtcaacggccgcgtcatcaattcgcccgcgctcgatgtgacg
gtgcgcgatgtcatcaccatcgacggcaagccgttgccggagcgcgaacgcacgcggctg
ttcctctatcacaagccgcgcgggctgatgacgacgcatgacgatcccgaaggccgcccc
actgtgttcgatcatctgccggaaggcttgccgcgcctgatctcgatcggccgtctggac
ttcaacaccgaaggtctgctgttgctgaccaatgatggcggcctgtcgcgcgcgctcgag
catcccgacaccggctggctgcggcgctatcgcgttcgcgcccatggcgaggtgacgcag
gcgcagcttgatgaactgaagaacggcgtcgaggtcgatggcgtcaaatacggttcgatc
gatgcgacgctggaacgcgatcagggcgccaacgtctgggtgacgttcgcgatccgcgag
ggcaagaaccgcgaggtgcgcaacgtgatggcgcatctcgggctcgaggtgaatcgcctg
atccgcgtgtcctatggcccgttccaactcggtgaaattccggaagggcaggtcgaggag
atcaagagccgggtgctgcgcgaacagcttggcgacaagatcgtggccctgtcgggcgcg
cagttcgacaagcccgcgcgcgaggatgaaggcccgaaggtgggccgcgacggcacgccg
ctgcgcagcaaggccgacaacaagaagatcaagcgctccaagatcgaggaccgcaagggc
cgcaccgtggtggtccagcgcaccggcagcgacgagaagcgcgcgcgcaacgaggccgaa
gccaacggttatggcccgccgcgcaaggccaaacgcggttatcacggcaagcgcgatctg
aagccgaaggactaa
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