Persicimonas caeni: FRD00_00240
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Entry
FRD00_00240 CDS
T06769
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pcay
Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcay03019
]
FRD00_00240
Messenger RNA biogenesis [BR:
pcay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRD00_00240
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Ortholog
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GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
tRNA_anti_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
QED30444
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All DBs
Position
62430..63578
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AA seq
382 aa
AA seq
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MYMKEKIFVSDLVEGSFITSVFLVADKTLRTTKSGNPFLALDLADKSGNIDSKVWDNAEA
IGSRFEADDFVMVEAQVESYRGQLQLNVRDLKRMDDDDVALEDFIPASRWDRDEMLEQLK
DVVGREIKSPEMLRFFDALFEEKQLMKQFTLAPAAKGNHHAYLGGLLEHALSMTRLAVRM
TRHYAHYYPGMLNQDLVIAGCVLHDIGKCFELSYGRSFNYTTEGQLVGHIVQGVELITAI
AKKVSPPLPAEMLMQLKHLVLSHHGKLEYGSPILPRTAEALLLHEIDMIDSRMNMYSNMV
AEHEGGTNSEEAFTDYQRLFQGRMYMGDDTGTKWAKTTTPNEDDLEGPGAAAVLEAEGTP
KGERRQPASAGESDPNLSLFSE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgaaggaaaagatttttgtgtcggacctcgtcgaggggagcttcatcacctcg
gtctttttggtcgccgacaagacgctgcgaaccaccaagagcggcaatccgtttctggcg
ctcgacctggccgacaagagcggcaatatcgactcgaaagtgtgggacaacgccgaggcc
atcggctcgcgcttcgaggccgacgatttcgtgatggtcgaggcgcaggtcgagtcgtac
cgcggccaactgcaactcaacgtgcgcgacctcaagcgcatggatgacgacgatgtcgcg
ctcgaagacttcatccccgcgtctcgctgggaccgcgacgagatgctcgagcagctcaag
gacgtcgtcggccgcgagatcaaaagccccgagatgcttcgcttcttcgacgcattgttc
gaagagaagcagttgatgaagcagttcacccttgcgccggccgccaagggcaaccaccac
gcctacctgggcggcctgctcgagcacgccctgtcgatgacgcgcttggcggtgcgcatg
acccgccactacgcgcactactaccccggcatgctcaaccaagatctggtgatcgccggc
tgcgtactccacgacatcggcaagtgcttcgagctcagctacggacgctcgttcaactac
accaccgaaggccaactcgtcggccacatcgtccagggcgtcgagctgatcaccgcgatc
gccaagaaggtcagccctcccctgcccgccgagatgctcatgcagctcaagcacctggtg
ttgagccaccacggaaagctcgagtacggctcccccatcttgccgcgcaccgccgaagcg
ctgctgctgcacgagatcgacatgatcgacagccgcatgaacatgtactccaacatggtc
gccgagcacgaaggaggcaccaacagcgaagaggcgttcaccgattatcagcgcctgttc
caggggcgcatgtatatgggcgacgacaccggcaccaagtgggcgaagacgaccacgccg
aacgaggacgacctcgagggccccggcgccgctgcggtgctcgaggccgagggcacgccc
aaaggcgagcgccgccagccggcgagcgccggggaatcggaccccaacctcagtttgttc
tccgaatga
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