KEGG   Persicimonas caeni: FRD00_01485
Entry
FRD00_01485       CDS       T06769                                 
Name
(GenBank) AAA family ATPase
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
pcay  Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:pcay00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pcay03009]
    FRD00_01485
   03012 Translation factors [BR:pcay03012]
    FRD00_01485
Enzymes [BR:pcay01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     FRD00_01485
    5.6.2.5  RNA 5'-3' helicase
     FRD00_01485
Ribosome biogenesis [BR:pcay03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   FRD00_01485
Translation factors [BR:pcay03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    FRD00_01485
SSDB
Motif
Pfam: AAA_11 AAA_12 AAA_30 AAA_19 Viral_helicase1 UvrD-helicase AAA_16 Helicase_RecD DEAD AAA_22 ResIII AAA_25 HEM4 TrwB_AAD_bind Flavi_DEAD nSTAND3 PhoH SLFN-g3_helicase UvrD_C_2 AAA SRP54 IstB_IS21 T2SSE PIF1 ATPase DnaB_C Peripla_BP_4 Herpes_ori_bp
Other DBs
NCBI-ProteinID: QED30677
LinkDB
Position
complement(367533..369458)
AA seq 641 aa
MSDPHEDKQLEKLAELWRKERETCRRRHLEERAETTLDERVEQGIALANLEVEETAAAPG
ERMMLWLAPRKPDALDGFRAGPGSPVVLWRESPTERDAVQAVIARRKGGRLGVMVDGDVP
DRLFGDTFHLDQEAPQTTFDRGERAVAAFRQAAKVSDQGQLRKVLFGAHEPKRRRSPEWS
VFDEELNEAQRRAVEQALSAEDVALVHGPPGTGKTRTLVEVVRQAVARGERVLVTAASNA
AVDNLAERLIEAGVEVVRLGHPARVAPSVEARSLDALLEATHDYKLAQKWMDEAREIRRR
IDARSSRGKSSRGSLSRAERAGMYREMRNLWGDARGHLRRVQGAIIDRTPVICATAAGAD
SKLLDDEEFDLVVLDEATQAADPIALVALLRAPKVVMAGDPHQLAPTVIDLEAEREGLGV
TLFERLSDEAVMLEVQHRMHECLMTFPSETKYDGQLVAADAVVEHTLDELDGVVADPVRT
GPLVFVDTAGKGWDEERSEEDPSSSNPAQAERTAAEVRRLVSRCVSPDDIAVISPYFAQV
RRLRKLLDDVPGVEIDTVDGFQGREKEAVVVDLVRSNPDGQLGFLKDTRRMNVALTRARR
FLLVIGDSATLSTHPYYAAFLEAVEQRGTWVSAWADEAEPL
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgagcgacccacacgaagacaagcagctcgaaaagctcgccgaactctggcgaaaggag
cgcgagacgtgtcgccgacgccacctcgaggagcgcgccgagacgaccctcgacgagcgc
gtcgagcagggcatcgccctggcgaacctcgaggtcgaggagaccgccgcggcccccgga
gagcgcatgatgctctggctggcgccgcgcaagcccgacgcgctcgacggcttccgggca
ggaccaggctcgcccgtggtcctgtggcgtgagtcgcccaccgagcgagacgcggtccag
gcggtcatcgcccggcgcaaaggcggccgcctcggcgtcatggtcgacggcgacgtgccc
gaccgactctttggcgacaccttccacctcgaccaagaggcccctcagacgaccttcgac
cgcggcgagcgcgcggtggccgcgtttcgacaagccgcgaaggtctccgatcaaggccag
cttcgcaaggtgctcttcggggcccacgagcccaagaggcgtcgctcgccggagtggagc
gtcttcgacgaagagctcaacgaggcgcagcgacgcgcggtcgagcaggcgctgtctgcc
gaggacgtcgccctcgtgcacggcccgccgggcaccggcaagacgcgcaccctcgtcgaa
gtagtgcgccaggccgtcgcccgcggcgagcgcgtgctggtgaccgcggcgagcaacgcc
gccgtcgacaacctcgccgagcgcctcatcgaggcgggtgtggaggtggtgcgcctgggc
catccggcgcgcgttgccccgtcggtcgaggcgcgctcgctcgacgcgctcttggaggca
acccacgactacaagctcgcccagaagtggatggacgaggcgcgcgagattcgccgacgc
atcgacgctcgaagctcacgaggcaagagctcgcgcgggagtttgagccgcgccgagcgc
gccggcatgtaccgcgagatgcgaaacctgtggggcgatgcgcgcggccacctgcgccgg
gtgcagggtgccatcatcgatcgcacgccggtcatctgcgcgaccgccgccggcgccgac
tcgaagttgctcgacgacgaggagttcgacctggtcgtactcgacgaggcgacccaggcc
gccgaccccatcgcgctggtcgcgctcttgcgcgcgcccaaggtggtcatggccggcgac
ccgcaccaactcgcccccacggtcatcgacctggaggccgagcgcgaggggctgggcgtg
acgctcttcgagcggctcagcgacgaggcggtgatgctcgaagtgcagcaccgcatgcac
gaatgcctgatgacctttccctccgagaccaaatacgacggccaactcgtcgccgccgac
gcggtcgtcgagcacaccctcgacgagctcgacggcgtggtcgccgacccggtgcgcacc
gggccgctcgtcttcgtcgacaccgccggcaagggctgggacgaagagcgcagcgaagaa
gatccgagcagctcgaaccccgcccaggccgagcgcaccgccgccgaggtgcgccggttg
gtcagccgctgcgtctcccccgacgatatcgccgtgatctcgccgtatttcgcgcaggtg
cgccggcttcgcaagctcttggacgacgttcccggtgtcgagatcgacacggtggacggg
tttcaagggcgcgagaaggaggccgtggtggtcgacttggtgcgcagcaacccggacggg
cagctcggtttcttgaaggacacccggcgcatgaacgtcgccctgacgcgcgcccggcgc
ttcttgctggtcatcggcgacagcgccacgctgagcacccacccgtattacgcagctttt
ttggaggccgtcgagcagcgcggcacctgggtgagcgcgtgggccgacgaggccgagccg
ctctaa

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