Persicimonas caeni: FRD00_03310
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Entry
FRD00_03310 CDS
T06769
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcay
Persicimonas caeni
Pathway
pcay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRD00_03310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcay03019
]
FRD00_03310
03009 Ribosome biogenesis [BR:
pcay03009
]
FRD00_03310
Enzymes [BR:
pcay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRD00_03310
Messenger RNA biogenesis [BR:
pcay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRD00_03310
Ribosome biogenesis [BR:
pcay03009
]
Prokaryotic type
rRNA helicases
FRD00_03310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QED31021
LinkDB
All DBs
Position
873234..875657
Genome browser
AA seq
807 aa
AA seq
DB search
MRDAAGLCTYAGPAGRSQMYRLPGPDPQNETLAHSPPTSAACGRRASSSRYLRPATRKQA
SLYRTRESMVETTSEKSFDDFYLSDEMLKALRTVGYKRPTPVQAESIPLILAGIDLIVQS
QTGSGKTAAFAIPTIEMLEPKPGRIDVLVLAPTRELAKQVCKEFERLGQYKDLSATAIYG
GASYEKQYKALETAQIVSATPGRLLDLAKRGSIDLSNLRILCLDEADEMLSMGFREELNA
IVDFLPEERQSLLFSATVNEDIKALAKGMLYYPEYISLSGDQVAAEAVEHVYFRCRGVGR
ERDLLKVIEYEKPESAIIFANTRDDTFTVTKFLQRHGYRAKVLNGDLPQKQREKTLGEMR
EGKVDFIVATDVAARGIDITDLTHVINYTLPQSAEVYVHRTGRTGRAGKSGRAVSLVSPA
EMATHFDIMSLYDIDITHRELPTADEIVEAQERGRLGELTSQIMELSRIPYGGKLGMARQ
LLETTNGEDNDERVQMLARLLSLGEAVVRDPKKRDAVTGRAFLKSASPLAPTPEAGRPET
TKQEPTKKEAPKQPEPKKKEEEAKAAEAKAAKEEKAPRKERTRKRERSVEKQPAEQAVAV
EAEAAPAPEETERPKRRRRRSRGAQKRGETKTEEKPTTEGKSGAKRRRSRGSKSRSRSSK
GRKSRSSKGRKSRSSKGRKSRSSKGRKSRGSKGRKSRSSNGRKSRSSESRQTKQSQSKST
ESKPQTPSFPVSKMYMNVGRDHFDDEKELLDMICYMSGFAPEDFGDVSVQSSYSFVQVRE
DYFYDIIKAMNNQEWKGVSLTAEPARK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacgctgccggcctgtgcacctacgccggtccggcaggtcgttcgcaaatgtat
cgcctgccgggtcctgacccacaaaacgaaactctggcgcattcgcctccaacgtccgca
gcgtgcgggcgtcgggcctcgtcaagtcgatatttgcgaccggccacacgtaaacaagca
agcctctatcgcacacgtgagagcatggtagaaaccacctctgagaagtcctttgacgat
ttttacttgagcgacgaaatgctcaaggccctgcgcaccgtcggctacaagcgccccact
ccggtccaggctgagtctattcctctcatcctggcgggtatcgacctgatcgtgcagtct
cagacgggttcgggaaagaccgcggcgtttgccattccgacgatcgagatgctcgagccc
aagccgggccgcatcgacgtgctggtactcgcccccactcgcgagttggccaagcaggtc
tgcaaagagttcgaacgattggggcagtacaaagacctgtcggccacggccatctacggc
ggcgcctcgtacgaaaagcagtacaaggcgctcgagaccgcccagatcgtctcggcgacc
cccggtcgcttgctcgacttggccaagcgcggatcgatcgatctgagcaacctgcgcatc
ctgtgcctcgacgaggccgacgagatgctgtcgatgggcttccgcgaagagctcaacgcc
atcgtcgactttctgcccgaggagcgccagtcgctgctcttctcggccacggtcaacgaa
gatatcaaagcgctggccaaggggatgctctactatccggagtacatctcgctgtcgggc
gatcaggtcgccgccgaggcggtcgagcacgtctacttccgctgccgcggagtcggccgc
gagcgcgatctgctcaaggtgatcgaatacgagaagcctgaaagcgcgatcatcttcgcc
aacacccgcgacgatacgttcaccgtcaccaagttcttgcagcgccacggctaccgcgcc
aaagtgctcaacggtgatctgccccaaaagcagcgtgagaagaccctcggcgagatgcgc
gagggcaaggtcgacttcattgtcgccaccgacgttgccgcacgtggcatcgacatcacc
gaccttacccacgtcatcaactacacgctgccccagtctgccgaagtctacgtgcaccgc
accggtcgaaccgggcgcgccggcaaatctggccgcgcggtcagcctggtctccccggcg
gagatggccactcacttcgatatcatgtcgctgtacgacatcgacatcacccatcgcgag
ttgccgaccgccgacgagatcgtcgaggcccaggaacgaggccgcctcggagagttgacc
agccagatcatggagctgtcgcgcatcccctacggcggcaagctcggcatggctcgccaa
ctgctcgagacgaccaacggcgaggataacgacgagcgtgttcagatgctcgcgcgcctc
ctgtcgctgggtgaagccgtcgtgcgtgacccgaagaaacgcgacgccgtcaccggacgc
gccttcctgaagtcggcgtccccgctggcgcccactccggaagccggccgtcccgaaacg
accaagcaggagccgaccaaaaaggaagcgcccaagcagcccgagccgaagaagaaagaa
gaggaagccaaggccgccgaagcaaaggccgccaaagaggagaaggcgcccagaaaggag
cgtacgcgcaagcgtgagcgctccgtcgagaaacagccggccgagcaagccgtggccgtc
gaggccgaagcggctccggctccggaagagaccgagcggcccaagcggcgtcgtcggcgc
tcgcgcggcgctcaaaagcgcggcgagacgaagaccgaggaaaaaccgacgaccgagggt
aagagcggcgccaagcgacgacgatcgcgcggcagcaagtcacgctcgcgtagcagcaaa
ggtcgtaagagccgcagcagcaaaggtcgcaagagccgcagcagcaaaggccgcaagagc
cgcagcagcaaaggccgcaagagccgcggcagcaaaggccgcaagagccgcagcagcaat
ggtcgcaagagccgcagcagcgagtcgcgccagaccaagcagtcccaatcgaagtcgacc
gagtcgaagccgcaaactccgagcttcccggtctccaagatgtacatgaacgtcggacgc
gaccacttcgacgacgaaaaggagcttctcgacatgatctgctacatgtcgggatttgcc
cccgaagacttcggcgatgtctccgtgcagagcagctatagttttgtgcaggtgcgcgaa
gactatttttatgacatcatcaaggcgatgaacaatcaggaatggaaaggcgttagcctt
accgccgagcctgcacgcaagtag
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