Persicimonas caeni: FRD00_08735
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Entry
FRD00_08735 CDS
T06769
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcay
Persicimonas caeni
Pathway
pcay03030
DNA replication
pcay03430
Mismatch repair
pcay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRD00_08735 (dnaE)
03430 Mismatch repair
FRD00_08735 (dnaE)
03440 Homologous recombination
FRD00_08735 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcay03032
]
FRD00_08735 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcay03400
]
FRD00_08735 (dnaE)
Enzymes [BR:
pcay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FRD00_08735 (dnaE)
DNA replication proteins [BR:
pcay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FRD00_08735 (dnaE)
DNA repair and recombination proteins [BR:
pcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FRD00_08735 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
tRNA_anti_2
DNA_pol_IIIA_C
BON
Motif
Other DBs
NCBI-ProteinID:
QED32035
LinkDB
All DBs
Position
2350890..2354447
Genome browser
AA seq
1185 aa
AA seq
DB search
MTDFVHLHVHTQFSLLDGAIKLPDLMNRVKELGMDTVAMTDHDNMYGAVNFQKAAQKAGV
KPIIGCEMNLTKEDFRESTDPMSYHLTVLAKNKTGYKNLMYLNSMGWLEGYHERTGIPRI
DRDLLAERKEGLIVLSGDLGGEINRAILRGDMDAARETAKAYAEIFGEDHFYLEIMDNAF
PEQKKCNDALIELGQELGIPLVATNDCHYIHQEDARAHGVLMAIQLQKTVELERMMEHGV
DQLYVRGPEEMKEAFAHVPEAIENTVKIAEMCDLEIPLGEIYLPQYDIPQEFFDENGIED
YKEGIHEYFEHVSWKGLEARFEEFDALGKEYDRQVYEDRLKEEIGIIRQMDFPGYFLIVW
DFIRWSKEQGIPVGPGRGSGAGSLVAYSLLITDIDPMPYDLLFERFLNPERVSMPDFDID
FCMNRRGEVIQYVHDKYGHDNVGMIITYGQLKAKACIRDVARALNFSYGEADKIAKLVPD
ELGISLQGALDQEPELPKMRKEDPRVDALFDIALSLENLNRQAGIHAAGVVIAEDPLWEY
VPVTRGANGEKVTQFAKEEVEEAGLVKFDFLGLKTLTVIDVALKLINAQRDEPFDIDAIP
LDDRSVYDMICAGDTTGVFQLESSGFQELLKKLKPSTFEDIVASVALYRPGPLGSGMVDD
FIDRKHGRKKVEYPHPWLEDVLKPTYGVMVYQEQVMKTAQVMAGFSLGGADILRRAMGKK
KIKVMEQQKKVFIEGAVEQDVDANKAEEIFDLMAYFSGYGFNKSHSAAYALITYQTAYLK
AHFPVEFMASLMTNDRDNTDKIVRFINEAKEMDIEVLPPDVNESRLDFSVSDGKIRFGLA
AIKGVGGGVVESIIETRDEGGPFESLYDFCGRVDHGAINKRTIEALVRCGAFDSISPREE
PARFIGDICTDRARMFAAIEMAVSRGQQAQHDAEVGQSSLFGMMSEDAKEEVLEENYPEV
EAWSDRDLLQNEKDLLGFYVTGHPLDRFDGELGLYGITATEVITGGKEVQHRDDVVIAGV
ITEYRERPLKSGNGRMAFVQLEDKTGQVEVLVFSRTFADYEEPLKSNEPILIRGQVQEEG
EGDARSWKVRANEIQRLIDARRERVKRLCVDIDADEVAQTTMRQLEKLFSSYHGEIPTSL
VFSMENDDGRGKIELALPAQYAVDPSDELMMSLDRLFRKRSTRFR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacttcgtacacctgcacgtccacacccagttcagcctcctcgacggtgccatc
aagctgcccgacctgatgaatcgggtcaaagagttgggcatggacaccgtcgcgatgacc
gaccacgacaacatgtacggggcggtcaacttccagaaggcggcgcaaaaagcaggcgtc
aagccgatcatcggctgcgagatgaacctcaccaaggaggactttcgcgagtcgaccgac
ccgatgagctatcacctcaccgtgttggccaagaacaagaccggctacaaaaacctgatg
tacctcaactcgatgggctggctggagggctaccacgagcgcacgggcatcccgcgcatc
gaccgcgaccttctggccgagcgcaaagagggcctcatcgtcttgtcgggcgacctgggc
ggcgagatcaaccgggcgattttgcgcggcgacatggacgcggcgcgcgagacggccaag
gcctacgccgagatctttggggaagaccacttctacctcgagatcatggacaacgccttc
cccgagcagaagaagtgcaacgacgcgctcatcgagctcggccaggagctgggcatcccg
ctggtggccaccaacgactgccactatatccaccaggaggacgcccgcgcccacggcgtg
ctcatggccatccagctccaaaagaccgtcgagctcgagcgcatgatggagcacggggtc
gaccagctgtacgtgcgcggccccgaggagatgaaggaggccttcgcccacgtgcccgag
gcgatcgagaacaccgtcaagatcgccgagatgtgcgacctggagatcccgctgggcgag
atttacctgccccagtacgacatcccccaggagttcttcgacgaaaacgggatcgaggac
tacaaagagggcatccacgagtacttcgagcacgtctcctggaagggcctggaggcgcgc
ttcgaggagttcgacgccctcggcaaggagtacgaccgtcaggtctacgaggaccggctc
aaagaagagatcggcatcatccgccagatggacttcccgggctatttcctcatcgtttgg
gacttcatccgctggtccaaagagcaaggcatccccgtcggtcccggccgcggctcgggt
gcgggtagtctggtggcgtactcgctgctgatcaccgacatcgacccgatgccctacgac
ctgctcttcgagcgctttttgaacccggaacgtgtgtcgatgcctgacttcgacatcgac
ttttgcatgaaccggcgcggcgaggtcatccagtacgtccacgacaagtacggccacgac
aacgtggggatgatcatcacctacggccagctcaaggccaaggcgtgcatccgcgacgtg
gcccgcgcgctcaacttttcttatggcgaggccgacaagatcgccaagctggtgcccgac
gagctgggcatcagcctgcagggcgcgctcgaccaggagcccgaactccccaagatgcgc
aaagaggacccgcgcgtcgacgccttgttcgacatcgcgctgtcgctggagaacctcaac
cgccaggcgggtatccacgccgccggcgtcgtcatcgccgaggacccgctgtgggagtac
gtccccgtcacccgcggcgccaacggcgaaaaggtcacccagttcgccaaagaggaggtc
gaggaggccggcctggtcaagttcgacttcctcggcctcaagacgctcacggtcatcgac
gtcgcgctcaagctcatcaacgcccaacgggacgagccgttcgacatcgacgccatcccg
ctcgacgaccgcagcgtctacgacatgatctgcgccggcgacaccaccggcgtcttccag
ctcgagtcctcgggcttccaggagctgctcaaaaagctcaagccgtcgaccttcgaggat
atcgtcgcttcggtcgccctgtaccgccccggcccgctgggctcgggcatggtcgacgac
ttcatcgaccgcaagcacgggcgcaaaaaggtcgagtacccccacccctggctcgaggac
gtcctcaagcccacctacggggtcatggtctatcaggagcaggtcatgaagaccgcccag
gtcatggccggcttctcgctcggcggcgccgatatcctgcgccgcgcgatgggtaagaag
aagatcaaggtgatggagcagcaaaagaaggtcttcatcgagggcgccgtcgagcaggac
gtcgacgccaacaaagccgaggagatcttcgacctgatggcctacttctcgggctacggc
ttcaacaagtcgcactcggcggcctacgcgctgatcacctaccagaccgcctacctcaag
gcgcacttcccggtcgagttcatggcctcgctcatgaccaacgaccgtgacaacaccgac
aagatcgtccgcttcatcaacgaagccaaagagatggacatcgaggtcctgccgcccgac
gtcaacgagtcgcggctcgacttctcggtctccgacggcaagatccgcttcggactcgcc
gccatcaaaggcgtgggcggcggcgtggtcgagtcgatcatcgaaacccgcgacgagggc
ggccccttcgagagcctgtacgacttctgcggccgcgtcgaccacggcgccatcaacaag
cgcaccatcgaggcgctggtgcgctgcggagccttcgactcgatcagcccgcgcgaagag
ccggcgcgcttcatcggcgacatctgcaccgaccgcgcccgcatgttcgccgccatcgag
atggccgtcagccgcggccaacaggcccagcacgacgccgaggtcggccagtcgagtctc
tttggcatgatgtccgaagacgccaaagaagaggtcctcgaggagaactaccccgaggtc
gaagcctggtcggaccgcgacctgctgcagaacgaaaaagacctgctcggcttctacgtc
accggccacccgctcgaccgcttcgacggcgagctggggctgtacggcatcaccgccacc
gaggtgatcaccggcggcaaagaggtccagcaccgagacgacgtggtcatcgccggcgtc
atcaccgagtaccgcgagcgccccctcaagagcggcaacggccgcatggccttcgtccaa
ctcgaagacaagaccggccaggtcgaggtgctggtgttcagccgcacgtttgccgactac
gaagagccgctcaaatcgaacgagcccattctgatccgcggccaggtccaggaagaaggc
gaaggcgacgcccgcagctggaaagtgcgcgccaacgaaatccagcgcctcatcgacgct
cgccgcgagcgcgtcaaacgcctgtgcgtcgacatcgacgccgacgaggtcgcccagacc
acgatgcgccagctcgaaaagctgttcagctcgtaccacggcgaaatccccaccagcctc
gtcttcagcatggagaacgacgacggccgcggcaaaatcgaactcgccctgcccgcccaa
tacgccgtcgatccgtccgacgagctgatgatgtcgctcgatcgtctgtttcggaagagg
tcgacgcggtttcggtaa
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