Persicimonas caeni: FRD00_12585
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Entry
FRD00_12585 CDS
T06769
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pcay
Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pcay01002
]
FRD00_12585
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pcay01011
]
FRD00_12585
Peptidases and inhibitors [BR:
pcay01002
]
Cysteine peptidases
Family C82
FRD00_12585
Peptidoglycan biosynthesis and degradation proteins [BR:
pcay01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
FRD00_12585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Baculo_LEF5
DUF6483
Motif
Other DBs
NCBI-ProteinID:
QED32773
LinkDB
All DBs
Position
complement(3394511..3397000)
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AA seq
829 aa
AA seq
DB search
MIRPLDKRNFAALAATLAVGTLVACGEPNISQEKASPYVDQWSKSVEGTLREMAVAPAGK
KNFQERLQKAAAQAESKLQRDEPPYDVLVNRVYQGIDYQFALVERTGLTDRGQAVWKTLE
AVEDHALDADDYTLAEIGSGLESLEKANARFEKLETFETSDAEKDAAIAWLTQQPVSTFE
LTDDNHAKLTQTVLDSDSGQRMKERLANYETVSTEIAALEAKVEHLLMQNLARYARQMKH
FRIHEIFVHPKNFDRWTNPNIEGRRPDKAEATWHARVAWRTAAKMTRDIAEKKEAEILHK
LIEQDLEKALTGDVNTALASLKPAQPQYAGLQKEYVRYKEIAEAGGWEKVPVTRGLRPGR
EHEVVAKLKKRLQVEGFYPADAAIDNKYDDKLEKAVEAYQETHQMQVTGKPHHMFWASVN
IPAKRRMEQIALNMQRWRESDIRHDDPMYVYVNIPDFHAEVWKEQERKLRFRIVVGNNDL
APKEKREAARKNKDESFKKHPNRTPTLSAYIDRVIYNPYWNVTERIRDEEILPEVRASVE
AGYKAKIKRLLGVPTKKPSEQAGEEKSEEATLTGTVGTTPSAEAQQEQATEMVGADAIAK
LREQSGAVEAAPAKPTRSAESFWSKNGDGRLVFDVAALRQLVGGGAPDAGSADTAGEAAP
SSLAAKFPYIDPATGQVNVNSTNPDAIPGWYEANNYEVMFPGKKWEYVRMKQGDDNALGK
VKVIFPNLHDVYLHDTPHKALFSRDIRAFSHGCMRMHEPLTFAEYLLEQDGKLDEYNVRR
ILSEGTYEPIFLDKQIPVHIDYVTVRVDDQGRANFLADIYDYDKFKEEG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgatccgaccgttggataaaagaaatttcgctgcgcttgccgccaccctggcggtcggc
acgctcgtcgcctgtggcgagccgaatatctcccaagaaaaggcctcgccgtacgtcgac
caatggtcgaagagcgtcgaggggacgttgcgcgagatggcggtggcgccggcgggcaag
aagaacttccaggagcgactgcaaaaagccgcagcccaggccgagtcgaagctccagcga
gacgagccgccctacgacgttttggtcaacagggtctatcagggcatcgactaccagttc
gcgttggtcgagcgcaccgggttgaccgatcgcggccaggcggtgtggaagaccctcgag
gcggtcgaagaccacgcgctcgacgctgacgactatacgctggccgagattggctccggt
ctggagtcgctcgagaaggcgaacgcgcgcttcgagaagctcgagaccttcgagacgagc
gacgccgagaaagatgcggcgatcgcctggctgacccaacagccggtgtcgaccttcgaa
ctcaccgatgacaatcacgccaagctgacccagacggtgctcgactccgacagtgggcag
cgtatgaaagagcggctggccaactatgagacggtcagcaccgagatcgccgcgctcgag
gccaaggtcgagcatttgttgatgcagaacctggcgcggtatgcgcgccagatgaagcat
ttccgcatccacgagatcttcgtccaccccaaaaacttcgaccggtggaccaacccgaat
atcgaggggcggcggcccgacaaagccgaggcgacctggcacgcgcgcgtcgcctggcgt
acagcggccaagatgacccgcgacatcgccgagaagaaagaagccgagatcttgcacaag
ctcatcgagcaggatctcgagaaggcgctcaccggcgacgtgaacaccgcgttggccagc
ctcaagccggcgcagccgcagtacgccgggctccagaaggagtacgtgcgctacaaagag
atcgccgaggccggcggctgggagaaggtgccggtgacccgcggccttcgcccggggcgc
gagcacgaggtggtcgcgaagctcaagaaacgcctgcaggtcgagggtttttatccggcc
gacgcggccatcgacaacaagtacgacgacaagctcgaaaaggcggtcgaggcgtaccag
gagacccaccagatgcaggtcaccggcaagccgcaccacatgttctgggcgagcgtgaat
atcccggccaagcggcgcatggagcagatcgcgctgaatatgcagcgctggcgcgagtcg
gatatccgccacgacgacccgatgtacgtctacgtcaatatccccgacttccacgctgag
gtctggaaggagcaggagcgcaagcttcgcttccgcatcgtggtcggaaacaacgacctg
gcgcccaaagagaagcgcgaagcggcccggaagaacaaggacgagtcgttcaaaaagcat
ccgaaccgcacaccgacgctgagcgcgtatatcgaccgggtgatctacaacccgtactgg
aacgtgaccgagcgcatccgcgacgaggagatcttgccggaggtgcgcgcctcggtcgag
gcgggctacaaggccaagatcaagcgcttgctcggcgtgccgaccaagaaaccgtccgag
caggcaggcgaagagaagtcagaagaggcgacgctgaccggcacggtcggaactacaccg
agcgccgaggcgcagcaggagcaggccaccgagatggtcggtgccgacgccatcgccaaa
cttcgtgagcagagtggtgcggtcgaagccgcaccggccaagccgacacgctcggcagag
tctttctggtcgaagaatggcgacggccggctcgtcttcgacgtcgccgcgctcaggcaa
ctcgtcggtggtggcgcgcccgacgccgggtcggccgacaccgccggtgaagccgcgccg
tcgagtttggctgccaagttcccctacatcgatccggccaccggccaggtcaacgtcaac
tcgacgaatcccgacgccatcccgggctggtacgaggcgaacaactacgaggtgatgttc
ccgggcaaaaagtgggagtacgtgcgcatgaagcagggcgacgataacgcactgggcaag
gtcaaagtgatcttcccgaacctgcacgacgtctacctgcacgacacgccgcacaaagcg
ctgttcagccgcgacatccgcgcgttcagccacggctgcatgcgcatgcacgagccgctg
acttttgccgagtacctgctcgagcaagacggcaaactcgacgagtacaacgtgcgtcgc
attctctccgagggcacctacgagcccatcttcttggacaagcaaatcccggtgcacatc
gactatgtgaccgtgcgcgtcgatgatcagggccgggcgaacttcttggccgacatttac
gactacgacaagttcaaggaagaagggtga
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