Persicimonas caeni: FRD00_17580
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Entry
FRD00_17580 CDS
T06769
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pcay
Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcay03016
]
FRD00_17580
Enzymes [BR:
pcay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FRD00_17580
Transfer RNA biogenesis [BR:
pcay03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FRD00_17580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
QED33705
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All DBs
Position
4783418..4785580
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AA seq
720 aa
AA seq
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MGGLENPHFASLNLMNLGEIIEFSSGDDHRIGVIVGEIGKKKLEVVTSEGDEMRATRKEV
TFETGVSVADYSSTSVAQSGARRFAKKVEEFAEELDLPILWQFVSDMGEAMGPEGIAELF
FATTEPAARLAVLSVLRDDIVYFKQKKGPTFEPRSESQVEELKKQVEAELQKERERQNFV
DGVVEILKADDDARAEVADAKMADPDFRKFARIIQKYAIYDQDHDRADQAKELLDEIEDG
YGRHLKGRYGSKAFHLMVDMTVWDEHENLHLLRHNISPDIADEIVEAAQVICERSWEPEG
YRRDLTDVLMFSIDSASTKDIDDAISCEKLPDGGYRVGVHIADPSARVAAGCNVDLEARG
RGTSIYLPTGIFPMFPHSLSHEKMSLVAGELRPAVSSLMTFNADLELVDTEIVPAMVEVD
HRLTYDGVDQILANPSEADLPGLDTSASENLASSLQSLQKIARALHEERVSNGAVNIDLP
ELKLKVDYTPGGEPTISTRVLDSNSPSRQLVSEVMVLNNRVLGEFCRDHELPTIFRGQAP
PEEELYTDDILSLPEGLAREFALVRKMKPGDVTTQPTSHFGLGLAVYVQASSPIRRYTDL
VAQRQIKAFLAEEALPYGESDIMEVLGSVESAARGAYLAERETTRYWTLYHLGTTLKGEP
LEATVVEHKGHDKAAAAVFVHDVAFKANCKFRDRPPVGAKCEVMVVKADPRKDVLQLRGA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggggggcctcgagaacccacactttgcaagtttgaacctcatgaacctaggcgaaatc
atcgaattcagctccggcgacgaccaccgcatcggcgtgatcgtcggggagatcggcaag
aagaaactcgaggtggtcacctccgagggcgacgagatgcgcgcgacgcgcaaggaggtc
accttcgagaccggtgtgagcgtggccgactactcgtcgacctcggttgcccagagcggg
gcgcgtcgctttgcgaagaaggtcgaggagttcgccgaggaactcgacctgcccatcttg
tggcaattcgtcagtgacatgggcgaggcgatgggccccgaggggatcgcagagctcttc
ttcgccacgaccgagccggcggcgaggctcgccgtcttgagcgtgctgcgcgacgatatc
gtctacttcaagcagaagaaggggccgaccttcgagccgcgctcggagtcgcaggtcgaa
gagctcaaaaagcaggtcgaggccgagctccaaaaagagcgcgagcgccagaatttcgtc
gacggcgtcgtcgagatcttgaaagccgacgatgacgcgcgcgccgaggtcgccgacgcc
aagatggccgaccccgactttcgcaaattcgctcgcatcatccagaaatacgccatctac
gatcaggaccacgaccgcgccgaccaggccaaagagctcctggacgagatcgaggacggg
tacggccgccatctcaagggccgctacggctcgaaggcgttccacctgatggtcgacatg
accgtgtgggacgagcacgaaaacctgcacctgcttcgccacaatatctcgccggatatc
gccgacgagatcgtcgaggctgcccaggtgatctgcgagcgaagctgggagccggagggc
taccggcgcgacctgaccgacgtgctcatgttcagcatcgactcggcgtcgaccaaggac
atcgacgatgcgatctcgtgcgagaagctgcccgacggaggctatcgcgtcggcgtgcat
atcgccgacccgtcggcgcgtgtggcggccggctgcaacgtcgacctcgaggcgcgcggg
cgcggcacgagcatctacctgcccacgggcatcttcccgatgtttccgcacagcctgagc
cacgagaagatgagcttggtggcaggcgagcttcgcccggcggtctcgagcctgatgacc
ttcaacgccgacctggaactggtcgacaccgagatcgtgccggccatggtcgaggtcgac
caccggctgacctacgacggcgtcgaccagatcctcgcgaacccatcggaggcagacctt
cccggtctggataccagcgcctccgagaatctggcgtcctccctccaatccctccaaaag
atcgcccgcgcgctgcatgaagagcgcgtctcgaacggcgcggtcaacatcgacctgccc
gagctcaagctcaaagtcgactacacccccggcggcgagcccaccatctcgacgcgcgtg
ctcgacagcaactcgccgtcgcgtcagctcgtcagcgaggtgatggtgctcaacaaccgc
gtgctcggcgagttctgccgtgaccacgagctgcccacgatctttcgcggccaggcgccg
cccgaagaggagctctacaccgacgatattctgagcctgcccgaggggctggcccgggag
ttcgccctggtgcgcaagatgaagccgggcgacgtcaccacccagccgacctcgcacttc
ggcctcggcctggcggtctacgtgcaggcgtcgagcccgattcgccgctacaccgacctc
gtcgcgcagcgccagatcaaggcgttcctggccgaagaagcgctcccctacggtgagtcg
gatatcatggaggtgttgggatcggtcgagagcgccgcgcgcggcgcctacttggccgag
cgcgagacgacgcgctactggacgctgtatcacctgggcaccaccctcaaaggcgagccg
ctcgaggcgaccgtcgtcgagcacaaaggccacgataaggcggccgcagcggtgttcgtg
cacgacgtcgccttcaaggcgaattgcaagttccgcgaccgtccgcccgtcggtgcaaag
tgcgaggtgatggtcgtcaaagccgacccgcgcaaagacgtgcttcaacttcgcggggcg
tga
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