Persicimonas caeni: FRD00_20390
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Entry
FRD00_20390 CDS
T06769
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcay
Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcay03016
]
FRD00_20390
Enzymes [BR:
pcay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FRD00_20390
Transfer RNA biogenesis [BR:
pcay03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FRD00_20390
Prokaryotic type
tRNA splicing ligases
FRD00_20390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CysS_C
Motif
Other DBs
NCBI-ProteinID:
QED34239
LinkDB
All DBs
Position
5541261..5542700
Genome browser
AA seq
479 aa
AA seq
DB search
MDLSKLERVEEFIYEIPADYRDDMNVPARIVADRSLLEQIKDDLSLEQLINVTTLPGIAF
WALGMPDIHQGYGFPVGGVAATKLPDGVISPGGIGFDINCGVRLLRTGIVHRDVRDKIEP
LVHELSRSVPSGYGRSGRLTLANAQMVEGVLEGGVPYLVERIGVGEPDDVEFIESGGRID
GANIAFVSEKAKQRGRDQLGTLGGGNHFLEVQVIDELFDEAAAEAMGLVPGELTVLIHTG
SRGLGHQVCTDYLREFGRVMAEHDIELPDRQLACAPMSSEAGKRYFGAMCAAANFAFCNR
QVLTHRVRQVIARELGEAVDAKVEVVYDVAHNIAKVEEFDGDEYCVHRKGATRAFGPSMP
DVPTAYRDIGQPVFIPGSMGTSSFVLVGTDEAAAASLNSTCHGAGRQMSRTAAKKRIGGK
ELRKELASRGIVVRCPSNAELAEEAPLAYKDVDRVVDVVSQAGIANKVARLRPVGVLKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggacctttccaaactcgaacgcgtcgaggagttcatctacgagattccggccgactac
cgcgacgacatgaacgtgccggcccggatcgtcgccgaccgcagcctcctcgagcagatc
aaagacgacctgagcctcgagcagctcatcaacgtcactacgctgccggggatcgccttc
tgggctttggggatgcccgatatccaccagggctacgggtttccggtgggcggagtcgcg
gccacgaagctgcccgacggggttatctcgccggggggcatcggcttcgacatcaactgc
ggggtgcgcctgttgcgcacgggcatcgtccacagggacgtgcgcgacaagatcgaaccc
ttggtccacgagctgagccggtcggtgcccagcggctacggtcgcagcggccggctgacg
ctggcgaacgcgcagatggtggagggcgtgcttgagggcggggtgccgtatctggtcgag
cgtatcggagtgggagagcccgacgacgtcgagtttatcgagtcgggcgggcgcatcgac
ggcgcgaatatcgcgtttgtctccgaaaaggcgaagcagcgcggcagagaccagctcggc
accctcggcgggggcaatcacttcttggaggtccaggtgatcgacgaactcttcgacgag
gcggccgccgaggcgatggggctcgtgcccggtgagttgaccgtgctcatccacaccgga
tcgcgcgggctgggtcatcaagtctgtacggattatctgcgcgagttcggccgggtgatg
gccgagcacgacatcgagcttcctgatcgtcagctcgcctgcgcgccgatgtcctcggag
gccggcaaacgctacttcggggcgatgtgcgcggcggcgaacttcgcgttttgcaaccgc
caggtgcttacccaccgggtgcgccaggtcatcgcgcgcgagctcggcgaggcggtcgac
gccaaggtcgaggtcgtctacgacgtcgcccacaatatcgccaaggtcgaggagttcgac
ggcgacgagtactgcgtgcaccgcaagggagccacgcgagccttcggcccgtcgatgccc
gatgtgcccacagcctatcgtgacatcggccagccggtgttcatccccggcagcatgggc
acgagctcgtttgtgttggtgggcaccgacgaggcggcggccgcgtcgctcaacagcacc
tgccacggggcagggcgccagatgagccgtacggccgccaaaaagaggatcggcggcaag
gagcttcgcaaagagctcgccagccgcggcatcgtggtgcgctgtccgtcgaacgccgag
ctcgccgaggaggcgccgctcgcctataaggacgtcgaccgggtcgtcgacgtcgtctcg
caggcgggcatcgccaacaaagtcgccaggttgcgaccggtgggcgtgctcaaaggataa
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