Persicimonas caeni: FRD00_21070
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Entry
FRD00_21070 CDS
T06769
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcay
Persicimonas caeni
Pathway
pcay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRD00_21070 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcay03021
]
FRD00_21070 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcay03400
]
FRD00_21070 (rpoC)
Enzymes [BR:
pcay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRD00_21070 (rpoC)
Transcription machinery [BR:
pcay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRD00_21070 (rpoC)
DNA repair and recombination proteins [BR:
pcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRD00_21070 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF5868
CdiI
Motif
Other DBs
NCBI-ProteinID:
QED34366
LinkDB
All DBs
Position
5713473..5717630
Genome browser
AA seq
1385 aa
AA seq
DB search
MKDIFSFFEKPKDPLSFSAIRIGIASPERIREWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECICGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDITLKDLEKVLYCVAYIVTDPGLTPLVTGQVLSEQKYMEYLETYGDTFEARM
GAEAIRDLLDRMDIPLQAQELRAEMKEATSNAKRKRISKRLKILEAVRDSENNAGWLVLD
VIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPEIIIRNEKRMLQ
EAVDALFDNGRRGKTITGPNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVAGPE
LKLHQCGLPKKMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKEKEEVWDILDEVIKEHP
VLLNRAPTLHRLGMQAFEPVLVEGKAIQVHPLVCVAYNADFDGDQMAVHVPLSLEAQMES
RVLLLSTNNILSPAHGGPIILPTQDIVLGCYWMTCVRPYAKGEYREDDEGRPVQGLFANF
DEVRMAYDNEVVELQASVKVRYNGELIDTTVGRVLFYEVCPDELPFELVNRTLDKKSLAK
IVDVSFRSAGNKATVLLADSIRTIGYEYATRGGISIAVDDMEIPSNKWSVVDNARDEVAE
IESQYTEGLITDGERYNKVVDIWANATEEVANQMMDEIAQQKFVDEKSGEELTAQSFNSI
YIMADSGARGSAQQMRQLSGMRGLMAKPSGEIIETPIVANFREGLSVLEYFISTHGARKG
LADTALKTANSGYLTRRLVDVANDCVVVEYDCGTLDGVTMTPLYEGGEVVESLADRILGR
VALEPVWDQNDEVLVDSNTEIDDDKAELIEDAGIERVRIRSTLTCHSVDGVCALCYGRDL
ARGRLVNVGEAVGTIAAQSIGEPGTQLTMRTFHIGGVGSLSVEQSSHEVRHGGTVKFHNV
KSVEKEMAGRTVVIVMTRNGEVSIHDDQGRERERYPLVFGSQLYYNDGDEIEPGALLAEW
EPFATPVLADTDGVVSFEDVVEGISMEERFDENTGLSRKVIIESRDSSVRPRIVVREKKG
GKQLSSHFLPVGAALFVGEGEKVDPGTILAKIPRETTKNKDITGGLPRVAELFEARTPKE
QALISEIEGVVSYGRETKTKRTIVVTPDVGDPKEYQINKSKHVTVLEGDRVRAGEAIMEG
SENPHDILRVKGRKDLAKYLVDEIQEVYRLQGVRINDKHIEIVVRQMLRKVRIVDVGDSD
FLVDEQVERSTFEEVNRRLMEKGGRPAVAQDLLLGITKASLSTESFISASSFQETTKVLT
EAALASKIDHLRGLKENVIMGRLIPAGTGATQYHHLRHEVEEPEELPEDLKRRFGTIDEE
LAAGE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggacattttcagctttttcgagaagcccaaagatccgcttagcttctcagcgatc
cgcattggaatcgccagcccggagcgtatccgggaatggagccatggcgaggtcaagaag
cccgagaccatcaactaccgcacgttcaagccggagcgagacggcctgttctgcgccaag
attttcggaccggtcaaagactacgagtgcatctgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgtgagaagtgtggcgtcgaggtcatccagtcgaaggtgcgccgcgag
cgtctgggtcatatcgacctggccacgcccgtcgcccacatctggttcctcaagagcctt
ccgtcgcgcatcggtaacctgctcgacatcacgctcaaggacctcgagaaggtcctgtac
tgcgtggcctacatcgtcaccgacccgggcctgactccgctggtgaccggtcaggttctg
agcgagcagaagtacatggagtacttggagacctacggagacaccttcgaggcccgcatg
ggcgccgaggcgatccgtgacctgctcgaccgcatggacatcccgctgcaagcccaagag
cttcgcgcggagatgaaagaggcgacgtcgaacgccaagcgcaagcgcatctccaagcgc
ctcaagattctcgaggccgtgcgcgactcggagaacaacgctggttggctggtgctcgac
gtcattccggtgcttccgccggaccttcgtccgctcgtgccgctcgacggcggccgcttt
gcgaccagtgacctcaacgatctgtatcgtcgagtcatcaaccgcaacaaccgcctcaag
cgcctgctcgagctgcacgcccccgagattatcatccgcaacgagaagcggatgctccag
gaggcggtcgacgcactgttcgacaacggccgtcgcggcaagaccatcacgggcccgaac
aagcgcccgctgaagtccttgagcgacatgatcaagggcaagcagggtcgtttccgccag
aaccttctgggtaagcgcgtcgactactcgggccgttcggtcatcgtggccggccccgag
ctcaagctgcaccagtgcggtcttcccaagaagatggccctcgagctgttcaagccgttt
atctacaacaagctcgaagagaagggctacgtcaccaccatcaagtctgcgaagaagatg
gtggagaaggaaaaggaagaggtctgggacatcctcgacgaggtcatcaaggagcacccg
gtgctcttgaaccgcgcgccgacgcttcaccgcctcggtatgcaggccttcgaaccggtg
ctcgtcgaaggtaaggcgattcaggtccacccgcttgtgtgtgtggcctacaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctgtcgctcgaggcgcagatggagtcg
cgcgtgctcctcttgagcacgaacaacatcctgtcgccggcccacggcgggccgatcatc
ctgcccacgcaggatatcgtcctgggttgctactggatgacctgcgtgcgcccctacgcc
aaaggcgagtaccgcgaggacgacgagggacgcccggtccagggcctgttcgccaacttc
gacgaagttcgcatggcctacgacaacgaggtcgtcgagctgcaggcgtcggtcaaggtt
cgctacaacggcgagctgatcgacaccaccgtcggccgcgtgctcttctacgaggtctgc
cccgacgagctccccttcgagctggtcaaccgcaccctcgacaagaagtcgctggccaag
atcgtcgacgtctcgttccgcagcgccggcaacaaggcgacggtccttctggccgactcc
atccgtaccatcggttacgagtacgccacccgcggtggtatctcgatcgcggtcgacgac
atggagatcccgagcaacaagtggagcgtggtcgacaacgcacgcgacgaagttgccgag
atcgaaagccagtacaccgaaggtctgatcaccgacggtgagcgctacaacaaagtcgtc
gacatctgggcgaacgcgaccgaagaggtcgccaaccagatgatggacgagattgcccag
cagaaattcgtcgacgagaagtccggcgaagagctgaccgcgcagtcgttcaactcgatc
tacatcatggctgactcgggcgctcgtggctcggcccagcagatgcgtcagctctccgga
atgcgtggcctgatggccaagccgtccggtgagattatcgagacgccgattgtcgcaaac
ttccgcgaaggcctgagcgtcctcgagtacttcatttcgacgcacggcgctcgtaaaggt
ctggcggatacggcgctcaagacggcaaactcgggttacctgacccgtcgcctggtcgac
gtcgccaacgactgtgtcgtcgtcgaatacgactgcggcaccctcgacggtgtgaccatg
acccccttgtacgagggtggtgaggtcgtcgagtcgctcgccgaccgtatcctcggtcgt
gtcgcgctcgagcctgtgtgggaccagaacgacgaggtgctcgtcgactcgaacaccgag
atcgacgacgacaaggccgagcttatcgaagacgccggcatcgagcgggtccgtatccgc
tcgacgctgacctgccactccgtcgacggggtgtgcgcgctttgctacggccgtgacctg
gcgcgtggtcgcctggtcaacgtcggtgaggcggtcggtaccatcgccgctcagtcgatt
ggtgagccgggtacccagcttacgatgcgtaccttccacattggtggtgtcggttcgctg
tccgtcgagcagtcctcgcacgaggtacgccacggcggtacggtcaagttccacaacgtc
aagtcggtcgaaaaagagatggccggccgcaccgtggtcatcgtgatgacccgtaacggc
gaagtctccatccacgacgaccagggccgtgagcgtgagcgttacccgctcgtgttcggc
tcgcagctgtattacaacgacggcgacgagatcgagccgggcgcactgctcgccgaatgg
gagccgtttgcgacgccggttctggccgacaccgacggtgtggtcagcttcgaagacgtc
gtcgagggcatctcgatggaggagcgcttcgacgagaacaccggtctttcgagaaaggtg
atcatcgagagccgcgactccagcgtgcgtccgcgcatcgtggtccgcgagaagaagggc
ggcaagcaattgtccagccacttcctgccggtcggtgctgcgctctttgtgggcgaaggc
gagaaggtcgacccgggtaccatcctggcgaagatcccgcgtgagaccaccaagaacaag
gacatcaccggtggtctgccgcgtgtcgccgagctgttcgaggcgcgtacgcccaaagag
caggcgctcatctccgagatcgagggtgtggtctcttacggtcgcgagaccaagaccaag
cgcaccatcgtggtcaccccggacgtgggtgatccgaaggagtaccagatcaacaagtcc
aagcacgtcaccgtgctcgagggcgaccgggtccgcgctggtgaggccatcatggagggt
tcggagaacccccacgacatccttcgcgtcaagggtcgcaaagacctggccaagtacctg
gtcgacgagattcaggaggtctaccgcctccagggtgtgcgcatcaacgacaagcacatc
gagatcgtcgtgcgccagatgcttcgcaaggtacgcatcgtcgacgtgggtgactccgac
ttcttggtcgacgagcaggtcgagcgctcgaccttcgaagaggtcaaccgtcgtctgatg
gagaagggcggtcgtccggcggtcgctcaggacttgctcctgggtatcaccaaggcgtcg
ctgtcgaccgagagcttcatctcggcatcgagcttccaggagaccaccaaggtgcttacc
gaggcggccctggccagcaagatcgaccacctgcgcggcctcaaagagaacgtcatcatg
ggacgtctcatcccggccggtacgggggcgactcagtaccaccacctgcgccacgaggtc
gaagagcccgaagagctccccgaagacctcaagcgtcgtttcggcaccatcgacgaagaa
ctcgccgccggcgagtga
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