Persicimonas caeni: FRD00_22165
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Entry
FRD00_22165 CDS
T06769
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pcay
Persicimonas caeni
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcay03019
]
FRD00_22165 (hrpB)
Enzymes [BR:
pcay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRD00_22165 (hrpB)
Messenger RNA biogenesis [BR:
pcay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FRD00_22165 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_C
HA2_N
Flavi_DEAD
ResIII
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QED34574
LinkDB
All DBs
Position
5994803..5997406
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AA seq
867 aa
AA seq
DB search
MQAPRPCMATAPEQPPKMPNLTHLPIDDVIPDIVDSLNTNNSLVLQAPAGAGKTTRVPPA
VLDAGLAGDGRILVLEPRRVAARATAKRIAYERGVSLGGEVGYQVRFDRRMTDETKLAII
TEGILTRRLQSDPFLEGVGAVILDEFHERSIHTDLAVAFLRELQQVRDDLKVIVMSATIT
TGPIADYLDCPIIESEGRTYPVDIEYLDKPSDDPIETQAARAVSQILGDEDDGDILVFMP
GAGSIHRTIDAVEPSAKSHGVEVLPLYGALPPQKQDRAIESSGGRKVIVSTNIAETSLTI
EGVTAVVDSGLVKQLRMAPQSGLDKLEKTHVSLASADQRAGRAGRVRPGRALRLWTHAFE
FRMPEEDTPEIQRVDITAPILEVIAWSSADPKEFGWFEAPPDHAIDRAVDLLRDLGAVER
DGFRLTDMGQKMLDLPAHPRLGRMLIEGARRGCLRTVAGMAAVLSERDFVNHVDDGAPTG
ESDLLRRVEVLDEAAHGRTHSARSLGMSVHTGGARRVKQVRDQLHRLLVDEETGRGGGVD
AQKALAVGYPDRVCISRGGERKYVMVGGEPLALAWESVVRDAEFLVAASIGGQIRGRGTG
AVSSRGLIRLANAMKREWLEELFPEHFTTRVEVDFDDERKRVMAVERELFHGLRLSEAVV
SVDEHADPADVADMLAEAASKNLSEAFSLSKESEQFLDRLRCLREWMPELEFPDLDADGE
EGRFREILRQICWGKRSFDDLKRVGLEGALKGYLNHEQISALDEYAPASLTVPSGKTRHL
KYEPGKPPVLEVRIQEMFGTARTPTVARGKIPVLLHLLAPNFRPQQVTDDLAGFWENTYP
EVRKELRARYSKHPWPEDPLSAKPIAK
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgccacgcccctgcatggccaccgcccccgaacaacctcccaagatgcccaat
ttaacccacctgcctatcgacgatgtcatccccgacatcgtcgattcgttgaacaccaac
aacagcctcgttctgcaggcgcccgccggcgccggtaagacgacccgcgtgccgccggcg
gtgctcgacgccggcctggccggcgacgggcgcatcctcgtgctcgagccgcggcgtgtg
gccgcgcgggcgacggccaagcgcatcgcctacgagcgcggagtgagcttgggcggcgag
gtcggctatcaggtgcgcttcgaccggcgcatgaccgacgagaccaagctcgccatcatc
accgaggggattttgacccgtcggctgcagtccgatccgtttttggagggcgtcggcgcg
gtcatcctcgacgaattccacgagcgcagcatccacaccgacctggcggtcgcatttttg
cgcgagctccagcaggtgcgcgacgacctcaaggtcatcgtgatgtcggcgacgatcacg
accggccccatcgccgactacctcgactgcccgatcatcgagtcagaggggcgaacctat
ccggtcgacatcgagtacctcgacaagccatccgacgatcctatcgagacgcaggccgcc
cgcgcggtcagtcagatcttgggcgacgaggacgacggcgatatcctcgtgttcatgcct
ggcgcgggctccatccaccgcacgatcgacgcggtcgagccttccgccaagagccacggc
gtcgaggtcttgccgctgtacggggcgctgccgccgcagaaacaagaccgggccatcgag
tcgagcggggggcgaaaggtcatcgtgtcgaccaatatcgccgagacctcgctcaccatc
gaaggcgtgaccgcggtggtcgactcggggctggtcaagcagcttcgcatggcgccgcag
tcgggcctcgacaagctcgagaagacgcacgtgagcctggcctcagccgaccaacgcgcc
ggtcgcgccggtcgcgtgcggccgggccgggcgcttcggctgtggacccacgccttcgag
tttcgcatgcccgaggaggacacccccgagatccagcgcgtcgacatcaccgcgccgatc
ttggaggtcatcgcctggagcagcgccgatcccaaggagttcggctggttcgaggcgccg
cccgaccacgccatcgaccgcgcggtcgacctgttgcgcgacctgggcgccgtagagcgc
gacgggtttcggctgaccgacatgggccagaagatgctcgacttgcccgcccaccctcgc
ctgggacgcatgctcatcgaaggggcccggcgaggctgcctgcgcaccgtagcggggatg
gcggcggtgctgagcgagcgtgatttcgtcaaccacgtcgacgacggtgcgcccaccggc
gagtcggacttgctgaggcgcgtcgaggtgctcgacgaggcggctcacgggcgcacgcac
tcggccagaagcctcggcatgagcgtgcacaccggcggcgcccgcagggtcaagcaggtg
cgcgaccagttgcatcgcctgctcgtcgacgaagagaccggccgaggcggcggcgtcgac
gcccagaaagccctcgccgtgggctacccagaccgcgtgtgcatcagtcgtggcggcgag
cgcaaatacgtgatggtcggcggcgagccgttggccctggcctgggagtcggtggtgcgc
gacgcggagtttctggtcgcggcgagcatcggcggccagattcgcgggcgcgggaccggt
gcggtgtcgagccgcgggctcattcgcctggccaacgcgatgaagcgcgaatggctcgag
gaactcttccccgagcatttcaccacgcgcgtcgaggttgacttcgacgacgagcgcaag
cgcgtgatggccgtcgagcgcgagctcttccacgggcttcgtctctccgaagcagttgtc
tcggtcgacgagcacgccgaccctgctgacgtcgccgacatgctcgccgaagcggcctcg
aagaacctgagcgaggcgttctcgctctccaaagagtccgagcaattcctcgaccggctt
cgctgcctgcgcgagtggatgcccgagctcgaatttcccgacctcgacgccgacggcgaa
gagggccggtttcgcgagattttgcgccagatctgctggggcaagcggagcttcgacgac
ctcaagcgcgtcgggctggagggcgcgctcaaagggtatctgaaccacgagcagatctcg
gcgctcgacgaatacgcccccgcctcgctgacggtgccgtcgggcaagacgcgccacctc
aagtacgagccgggcaaaccgccggtcttggaggtgcgcatccaggagatgttcggcacc
gcgcgcaccccgacggtcgcccgcggcaagattccggttctcctgcacctgctcgctccc
aatttccggccccagcaggtcaccgacgacctggccgggttctgggagaacacctacccg
gaggtgcgaaaggagcttcgcgcccgctattcgaagcatccgtggcccgaagatccgctg
tcggcgaagccgatcgcaaagtag
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