KEGG   Persicimonas caeni: FRD00_23540
Entry
FRD00_23540       CDS       T06769                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pcay  Persicimonas caeni
Pathway
pcay04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pcay00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    FRD00_23540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcay03019]
    FRD00_23540
   03009 Ribosome biogenesis [BR:pcay03009]
    FRD00_23540
   04131 Membrane trafficking [BR:pcay04131]
    FRD00_23540
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pcay04147]
    FRD00_23540
Messenger RNA biogenesis [BR:pcay03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     FRD00_23540
Ribosome biogenesis [BR:pcay03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    FRD00_23540
Membrane trafficking [BR:pcay04131]
 SNARE
  SNARE associated proteins
   Others
    FRD00_23540
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    FRD00_23540
Exosome [BR:pcay04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   FRD00_23540
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 CDC48_2 AAA_5 AAA_33 AAA_22 AAA_14 AAA_lid_PRS2_C TIP49 IstB_IS21 nSTAND3 AAA_28 AAA_30 RNA_helicase NPHP3_N AAA_18 Mg_chelatase NACHT AAA_7 ATPase AAA_3 Sigma54_activat DUF815 AAA_11 AAA_17 AAA_24 TsaE AAA_19 Sigma54_activ_2 Parvo_NS1 SLFN-g3_helicase PhoH ResIII NB-ARC Zeta_toxin CPT 7TMR-HDED
Other DBs
NCBI-ProteinID: QED34830
LinkDB
Position
complement(6344635..6346920)
AA seq 761 aa
MTEEDSLRLQVAGANERDVGKGTARINKNVIEELGIRQGDVIEIHGQRTTAAIALPPYPE
DEGLPIIRLDGLIRANAGVSMGDRVQVGAAETKPAKKVVLGPAQENLRLQGSGQALLRTL
LERPLVAGDVVSTSVYRREPGMNQSQFPDEVFRRFFQQRAFGLQEIRLQVISTKPRGIVR
VTQDTEIELSPEYVEPEESHRVDVTYDDIGGLGDAIGQVREMIELPLKQPALFQRLGIDP
PKGVLLHGPPGTGKTLLARAVANESDAAFYHIAGPEIMGRYYGESEERLREIFEEAQNNS
PAVIFFDEIDSIAPKREQVTGETERRVVAQLLTLMDGLEPRQNVVVVAATNRPDAVDEAL
RRPGRFDREIVIGVPDQEGRNQILNIHTRGMPLDEDVNVDELSHKTYGFVGADLAALARE
AAIEALRRNLPNIDLDEEELAPEVLENLFVTNEDFHDALRRIQPSALREIMIQVPDVHWD
DIGGLDQAKQQLREGIELPLQQPEAFRRVGIRPAKGFLLYGPPGTGKTLMAKAVAREAEA
NFVSTKSSDLLSKWYGESEQQIARLFNRARQVAPTVIFIDEIDSLAPQRGGGLGEPAVTE
RVVNTLLAEMDGLEGMDGVVVVGATNRPTLLDPALLRPGRFDEVVYVPVPEEEGRLKILQ
IHTEKMPLADDVDLAALASRTQGFTGADLENLVRRAGLNALRANLEADKVSMDVFEQALE
QSHPSVTPEMESEYEQMHDKLKQENPGGRRQLGFSTGASEE
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgactgaagaagatagcttgcgacttcaagttgccggcgccaacgagcgagacgtcggc
aagggcacggcccgcatcaacaagaatgtcattgaggagctcggcatccgccagggcgac
gtgatcgagatacacggccaacgcaccacggcggctatcgcgctgcctccgtatcccgaa
gacgaaggcctccccatcatccggctcgacggcttgattcgcgccaacgccggagtgagc
atgggcgaccgcgtccaggtgggcgcggcggagacaaagcccgccaaaaaggtcgttctg
ggacctgcgcaggagaacctgcgcttgcagggaagcggccaagccttgcttcgcaccctt
ctcgagcgaccgctggtcgccggagatgtcgtctcgacgtcggtctaccggcgtgagccg
ggcatgaaccagagccagtttcccgacgaagtgttccgccgtttcttccagcagcgtgcg
ttcggccttcaagagattcgcctgcaagtcatctcgacgaagccgcgcggcatcgtgcgg
gtgactcaggacaccgagatcgagctcagcccggagtacgtcgagccggaagagtcgcac
cgcgtcgacgtcacttacgacgatatcggcggcctgggcgacgccatcgggcaagtgcgc
gagatgatcgagctgcccctcaagcagcccgcgctcttccagcgcctcggcatcgatccc
cccaagggcgtgctgcttcacggcccgcctggcaccggtaagacgctgctcgcgcgcgcc
gtggccaacgagtcggacgcggcgttctaccatatcgccgggcccgaaattatggggcgc
tattacggtgagtccgaggagcggcttcgcgaaatcttcgaggaggcccagaataattcg
ccggcggtcatcttcttcgacgagatcgactcgatcgcgcccaagcgcgagcaggtcacc
ggcgagacggaacgacgcgtagtcgcccagcttctgaccctgatggacggcctcgagccg
cgccagaacgtggtcgtcgtggcggcgaccaaccgtcccgacgccgtcgacgaggcgctg
aggcgccccgggcgcttcgaccgcgagatcgtcatcggcgtgcccgatcaggagggtcgc
aaccagatcctcaatatccacacccgtggcatgccgctcgacgaggacgtcaacgtcgac
gagctctcccacaagacctacggctttgtgggcgccgacctcgccgccctggcgcgcgag
gcggccatcgaggcgctccggcgaaacctgcccaacatcgatctcgacgaggaggagctc
gcccccgaggtgctcgagaacctcttcgtgaccaacgaagacttccacgacgccctgcgg
cgcatccagccgtcggcgcttcgcgagatcatgatccaggtgcccgacgtccactgggac
gatatcggcggcctcgaccaggccaagcagcagcttcgcgagggcatcgagttgccgctg
cagcagcccgaggcgttccgccgcgtgggcattcgaccggccaaggggttcttgctctat
ggacctccgggcacgggtaagaccctgatggccaaggccgtcgcccgcgaggcggaggcg
aacttcgtgtcgacgaagtcctccgacctgctctccaagtggtacggcgagtccgagcag
cagattgcccggctcttcaaccgcgcccggcaggtcgcgcccacagttatcttcatcgac
gagatcgactcgctcgccccgcagcgcggcggcggcttgggcgagccggcggtcaccgag
cgcgtggtcaacacgctgctggccgagatggacggcctcgagggcatggacggcgtggtc
gtcgtcggcgccaccaaccgccccaccctgctcgacccggcgttgctgcgcccgggacgc
ttcgacgaggtggtctacgtgccagtacccgaggaagaaggccgcctcaagatcttgcag
attcacaccgagaagatgccgctggccgacgacgtcgacctggcggcgctcgcctcgcgc
acccaggggttcaccggcgccgacctcgaaaacctcgtgcgtcgcgccggcctcaacgcg
cttcgcgccaacttggaggccgacaaggtctccatggacgtcttcgagcaggcgctcgaa
cagtcgcatccctcggtcacccccgagatggagagcgagtacgagcagatgcacgacaag
ctcaagcaagagaaccccggcgggcgtcgccagctcgggttctcgaccggagcgagtgag
gagtaa

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