Persicimonas caeni: FRD00_23540
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Entry
FRD00_23540 CDS
T06769
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pcay
Persicimonas caeni
Pathway
pcay04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
FRD00_23540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcay03019
]
FRD00_23540
03009 Ribosome biogenesis [BR:
pcay03009
]
FRD00_23540
04131 Membrane trafficking [BR:
pcay04131
]
FRD00_23540
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcay04147
]
FRD00_23540
Messenger RNA biogenesis [BR:
pcay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
FRD00_23540
Ribosome biogenesis [BR:
pcay03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
FRD00_23540
Membrane trafficking [BR:
pcay04131
]
SNARE
SNARE associated proteins
Others
FRD00_23540
Autophagy
Aggrephagy
Other aggrephagy associated proteins
FRD00_23540
Exosome [BR:
pcay04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FRD00_23540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_33
AAA_22
AAA_14
AAA_lid_PRS2_C
TIP49
IstB_IS21
nSTAND3
AAA_28
AAA_30
RNA_helicase
NPHP3_N
AAA_18
Mg_chelatase
NACHT
AAA_7
ATPase
AAA_3
Sigma54_activat
DUF815
AAA_11
AAA_17
AAA_24
TsaE
AAA_19
Sigma54_activ_2
Parvo_NS1
SLFN-g3_helicase
PhoH
ResIII
NB-ARC
Zeta_toxin
CPT
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QED34830
LinkDB
All DBs
Position
complement(6344635..6346920)
Genome browser
AA seq
761 aa
AA seq
DB search
MTEEDSLRLQVAGANERDVGKGTARINKNVIEELGIRQGDVIEIHGQRTTAAIALPPYPE
DEGLPIIRLDGLIRANAGVSMGDRVQVGAAETKPAKKVVLGPAQENLRLQGSGQALLRTL
LERPLVAGDVVSTSVYRREPGMNQSQFPDEVFRRFFQQRAFGLQEIRLQVISTKPRGIVR
VTQDTEIELSPEYVEPEESHRVDVTYDDIGGLGDAIGQVREMIELPLKQPALFQRLGIDP
PKGVLLHGPPGTGKTLLARAVANESDAAFYHIAGPEIMGRYYGESEERLREIFEEAQNNS
PAVIFFDEIDSIAPKREQVTGETERRVVAQLLTLMDGLEPRQNVVVVAATNRPDAVDEAL
RRPGRFDREIVIGVPDQEGRNQILNIHTRGMPLDEDVNVDELSHKTYGFVGADLAALARE
AAIEALRRNLPNIDLDEEELAPEVLENLFVTNEDFHDALRRIQPSALREIMIQVPDVHWD
DIGGLDQAKQQLREGIELPLQQPEAFRRVGIRPAKGFLLYGPPGTGKTLMAKAVAREAEA
NFVSTKSSDLLSKWYGESEQQIARLFNRARQVAPTVIFIDEIDSLAPQRGGGLGEPAVTE
RVVNTLLAEMDGLEGMDGVVVVGATNRPTLLDPALLRPGRFDEVVYVPVPEEEGRLKILQ
IHTEKMPLADDVDLAALASRTQGFTGADLENLVRRAGLNALRANLEADKVSMDVFEQALE
QSHPSVTPEMESEYEQMHDKLKQENPGGRRQLGFSTGASEE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaagatagcttgcgacttcaagttgccggcgccaacgagcgagacgtcggc
aagggcacggcccgcatcaacaagaatgtcattgaggagctcggcatccgccagggcgac
gtgatcgagatacacggccaacgcaccacggcggctatcgcgctgcctccgtatcccgaa
gacgaaggcctccccatcatccggctcgacggcttgattcgcgccaacgccggagtgagc
atgggcgaccgcgtccaggtgggcgcggcggagacaaagcccgccaaaaaggtcgttctg
ggacctgcgcaggagaacctgcgcttgcagggaagcggccaagccttgcttcgcaccctt
ctcgagcgaccgctggtcgccggagatgtcgtctcgacgtcggtctaccggcgtgagccg
ggcatgaaccagagccagtttcccgacgaagtgttccgccgtttcttccagcagcgtgcg
ttcggccttcaagagattcgcctgcaagtcatctcgacgaagccgcgcggcatcgtgcgg
gtgactcaggacaccgagatcgagctcagcccggagtacgtcgagccggaagagtcgcac
cgcgtcgacgtcacttacgacgatatcggcggcctgggcgacgccatcgggcaagtgcgc
gagatgatcgagctgcccctcaagcagcccgcgctcttccagcgcctcggcatcgatccc
cccaagggcgtgctgcttcacggcccgcctggcaccggtaagacgctgctcgcgcgcgcc
gtggccaacgagtcggacgcggcgttctaccatatcgccgggcccgaaattatggggcgc
tattacggtgagtccgaggagcggcttcgcgaaatcttcgaggaggcccagaataattcg
ccggcggtcatcttcttcgacgagatcgactcgatcgcgcccaagcgcgagcaggtcacc
ggcgagacggaacgacgcgtagtcgcccagcttctgaccctgatggacggcctcgagccg
cgccagaacgtggtcgtcgtggcggcgaccaaccgtcccgacgccgtcgacgaggcgctg
aggcgccccgggcgcttcgaccgcgagatcgtcatcggcgtgcccgatcaggagggtcgc
aaccagatcctcaatatccacacccgtggcatgccgctcgacgaggacgtcaacgtcgac
gagctctcccacaagacctacggctttgtgggcgccgacctcgccgccctggcgcgcgag
gcggccatcgaggcgctccggcgaaacctgcccaacatcgatctcgacgaggaggagctc
gcccccgaggtgctcgagaacctcttcgtgaccaacgaagacttccacgacgccctgcgg
cgcatccagccgtcggcgcttcgcgagatcatgatccaggtgcccgacgtccactgggac
gatatcggcggcctcgaccaggccaagcagcagcttcgcgagggcatcgagttgccgctg
cagcagcccgaggcgttccgccgcgtgggcattcgaccggccaaggggttcttgctctat
ggacctccgggcacgggtaagaccctgatggccaaggccgtcgcccgcgaggcggaggcg
aacttcgtgtcgacgaagtcctccgacctgctctccaagtggtacggcgagtccgagcag
cagattgcccggctcttcaaccgcgcccggcaggtcgcgcccacagttatcttcatcgac
gagatcgactcgctcgccccgcagcgcggcggcggcttgggcgagccggcggtcaccgag
cgcgtggtcaacacgctgctggccgagatggacggcctcgagggcatggacggcgtggtc
gtcgtcggcgccaccaaccgccccaccctgctcgacccggcgttgctgcgcccgggacgc
ttcgacgaggtggtctacgtgccagtacccgaggaagaaggccgcctcaagatcttgcag
attcacaccgagaagatgccgctggccgacgacgtcgacctggcggcgctcgcctcgcgc
acccaggggttcaccggcgccgacctcgaaaacctcgtgcgtcgcgccggcctcaacgcg
cttcgcgccaacttggaggccgacaaggtctccatggacgtcttcgagcaggcgctcgaa
cagtcgcatccctcggtcacccccgagatggagagcgagtacgagcagatgcacgacaag
ctcaagcaagagaaccccggcgggcgtcgccagctcgggttctcgaccggagcgagtgag
gagtaa
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