Persicimonas caeni: FRD00_28470
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Entry
FRD00_28470 CDS
T06769
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pcay
Persicimonas caeni
Pathway
pcay03410
Base excision repair
pcay03430
Mismatch repair
pcay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FRD00_28470 (recJ)
03430 Mismatch repair
FRD00_28470 (recJ)
03440 Homologous recombination
FRD00_28470 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcay03400
]
FRD00_28470 (recJ)
DNA repair and recombination proteins [BR:
pcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FRD00_28470 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FRD00_28470 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRD00_28470 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QED35759
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Position
7654930..7656705
Genome browser
AA seq
591 aa
AA seq
DB search
MILNSGLPRNPREWVLKRCSSEQCVRLSREFELHPLTARLLVQRGIYEPQAAHDFLNPTL
SQMIDPFTMKGMKRAVREMLVALDGGERIVIHGDYDVDGVCSVSVLYTFLRALGANVGYY
VPLRDQDGYGLNAQTVRRLAAEGCDLLVTTDCGVSNVEEIKLARDLGLRVVVIDHHSVPE
VLPPANAILNPLQIDCDYAFKELAAVGVVFNFVVALRKELRSRGVFRHVPEPDVRDLLDL
VALGTIADVVPLVGQNRLYVHHGLDILAQRKRAGVSALLERVSRPESGVNTQTVSFGLAP
RLNAAGRLGDASICVELLTTRSYRKALELAKRLEALNGDRQELERGILGSALPQAQSQVD
ALRKILVVAGVDWPRGVLGIVASRLMDRFHRPTIMVGIEDGEAKGSARSIEGVDILSILD
ESAELLSTYGGHTSAAGLSFVAENLEELRDSLNEAADRLLDAEPLPKPSVRLDGEVELGS
LDDRFVRDLKRLEPFGTGNREPIFLAPQSQASRVRVVGTNHLRARFRDGTGALDGIGFSL
AGLEPLLSDSVAIAFSPRYSVFRGRGRLEMHIKDIRSASETIPDRIEQIEH
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
ttgatcttgaattccgggcttcccagaaatccacgggagtgggtgctcaaacgctgctcg
tccgagcagtgtgtgcggctgagccgggagttcgaactccatccgctgacagcgcgtctg
ttggtccagcgcggcatctatgagccgcaggcggcccacgacttcctcaaccccacgctg
agccagatgatcgaccccttcaccatgaaggggatgaagcgcgcggtgcgcgagatgctc
gtcgcgctcgacggcggtgagcgcatcgtcattcacggcgattacgacgtcgacggggtg
tgcagcgtgtcggtgctctacacgtttttgcgcgccctgggcgccaacgtgggctactac
gtgccgcttcgcgaccaggacggctacgggctcaacgcgcagacggtgcgccggctcgcc
gccgagggctgcgacctgctcgtgacgaccgattgcggcgtgtcgaacgtcgaagagatc
aagctcgcccgcgacctgggcctgcgcgtggtcgtcatcgaccaccacagcgtcccggag
gtgctcccgccggccaacgccatcctcaacccgctccaaatagactgcgactacgccttc
aaggaactcgcggcggtgggcgttgtctttaatttcgtggtcgcgcttcgcaaggagctt
cgaagccgcggggtgtttcgccacgtgcccgagcccgatgtgcgcgacctactcgacctg
gtcgcgctcggcaccatcgccgacgtcgtgccgctggtgggccagaaccgcctgtatgtc
catcacggcctcgacatcctcgcccagcgcaagcgcgcgggcgtctcagcgctcctagag
cgcgtctcgcggcccgagagcggtgtgaacacccagacggtcagcttcgggctcgcgccg
cgtctcaacgccgctgggcgcctcggcgacgcgtccatttgcgtggagcttttgaccacg
cgcagctaccgcaaggcgctcgagctggccaaaaggctcgaggcgctcaacggcgaccgg
caggagctcgagcgcggcatcctcgggtccgccctgccccaggcgcagtcgcaggtcgac
gcgctgcggaagattctggtggtggccggtgttgattggccgcggggtgtgctcggcatc
gtggccagccgcctcatggatcgcttccaccgaccgaccatcatggtcggcatcgaggac
ggcgaagccaaaggcagcgcgcgaagcatcgagggtgtcgatattctgagcatcctcgac
gagtccgccgaactgttgagcacctacggcggccacacctcggcggcgggcttatcgttc
gtggccgagaaccttgaggagcttcgcgacagcctcaacgaggccgccgaccggctcctc
gacgccgagccgctgcccaagccgagcgtgcgcctcgacggtgaagtcgagcttggaagc
ctcgacgatcggttcgtgcgcgacctcaagcgcctcgagccttttggcaccggcaaccgc
gagcccatctttttggcgccgcagagtcaggcgtcgcgagtgcgcgtggtcgggaccaat
cacctgcgcgcacgctttcgcgacggcaccggtgccctcgacggcatcggcttttcgctg
gccgggctcgagccgttgttgagcgactcggtcgccatcgccttctcgcctcgttactcg
gtctttcgcggccggggacggctcgagatgcacatcaaagacattcgaagcgcctcggag
accattccggaccgcatcgagcaaattgagcactga
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