Piscinibacterium candidicorallinum: ACMDW7_01805
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Entry
ACMDW7_01805 CDS
T10926
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcaz Piscinibacterium candidicorallinum
Pathway
pcaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACMDW7_01805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcaz03021
]
ACMDW7_01805 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcaz03400
]
ACMDW7_01805 (rpoC)
Enzymes [BR:
pcaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACMDW7_01805 (rpoC)
Transcription machinery [BR:
pcaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACMDW7_01805 (rpoC)
DNA repair and recombination proteins [BR:
pcaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACMDW7_01805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
XOD97196
LinkDB
All DBs
Position
388058..392311
Genome browser
AA seq
1417 aa
AA seq
DB search
MKALLDLFKQVQAEEQFDAIKIGIASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPCAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVIDPGMTPLKRCQIMTEDDYLAKVEEFGDEFTAIM
GAEGIRELLKSINIDQQVDTLRQELGATSSEAKIKKYAKRLKVLEAFQRSGIKPEHMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNRLEAMGLATTIKAAKKIVENQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVIFPASGEPSIVPSQDIVLGLYYTTRARVNGKGEGMFFADVGEVHRALQSG
EVEITSKVTVRIKEQVKDKATGEIREQIRRVETTVGRAILSEIMPAGLSFDHINKPLKKK
EISKLINASFRRCGLRATVVLADQLMQNGFKLATRAGISIAMSDMLIPKAKHDIVAASSK
EVKEIDQQYASGLVTAGERYNKVVDIWGRAGDQVSKAMMDQLATEEVTDRHGNKTRQESF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTINGVNMKALVEGGEVIEKLADRI
LGRVLVNDVINPETGDVLFAAGYLLDEDAVERIEALGIDEVKVRTPLTCETRHGLCAKCY
GRDLGRGALVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASGVEAKSNGTVR
FQAMRYVTNAKGDQIVISRSGEVLITDDAGRERERHKIPYGATLAVMDGKKITAGTNLAT
WDPLTRPIITEYAGRAKFENVEEGLTVAKQVDEVTGLSTLVVIDAKRRGSTKAVRPQIKL
VDEAGKEVTLAGTDHPVTITFPVGALITVKDGQEIKPGELLAKIPTESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVTFGKETKGKQRLVITDLDGNAHEFLIPKDKNVLVHEG
QVVNKGELIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVQVLSAGDTTFIPGEQVERSELLNENDRVIAEGKTPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHLARKEREKAEEAERL
AANETLTIESVFGPSTDTAEVAAEGGEAATPDQGAAE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctactcgacctattcaagcaagttcaggctgaagagcagtttgatgccatc
aagatcggcatcgcttcgcccgagaagatccgttcctggtcctacggcgaggtcaagaag
cccgagaccatcaactaccgcaccttcaagccggagcgcgatggcctgttctgcgccaag
atcttcggcccgatcaaggactatgagtgcctgtgcggaaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggctgcaccctgcgcgcacatctggttcctgaagtccctg
cccagccgcctgggcatggtcttggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcattcgtcgtgatcgatccgggcatgacgccgctcaagcgctgccagatcatg
accgaggacgactacctcgccaaggtcgaggaattcggcgacgaattcaccgccatcatg
ggcgccgaaggcatccgcgagctgctcaagtcgatcaacatcgaccagcaggtggacacc
ctgcgccaggagcttggcgccacctcgtccgaagccaagatcaagaaatacgccaagcgc
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagcacatggtgctcgaa
gtgctgcccgtgctgccgcctgaactgcgtccgctggtgccgctggacggtggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgtctgaag
cgtctgctcgagctcaaggcccctgaaatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtggactcgctgctggacaacggtcgccgcggcaaggccatgactggcgccaac
aagcgcgcactcaagtccttggccgacatgatcaagggcaagggcggccgcttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttccgtgatcgtggtgggcccgacg
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggagttgttcaagccgttc
atcttcaatcgcctcgaggcgatgggtctggccacgaccatcaaggctgccaagaagatc
gtcgagaaccaggaaccggtcgtgtgggacatcctcgaggaggtgatccgcgagcatccc
gtgatgctcaaccgcgccccgaccctgcaccgcctgggcatccaggccttcgaaccgacc
ctggtcgaaggcaaggctatccagctgcacccgctggtctgcgccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacgtgatcttcccggcctcgggcgagccctcgatc
gtgccctcgcaggacatcgtgctcggcctgtactacacgacccgtgcccgcgtgaacgga
aagggcgagggcatgttcttcgccgacgtcggcgaagtgcaccgcgccctgcagtccggc
gaagtcgagatcacctccaaggtgactgtgcgcatcaaggaacaggtcaaggacaaggcc
accggtgagatccgcgagcagatccgccgcgtggaaaccaccgtcggccgcgcgatcctc
tccgagatcatgccggccggcctgtccttcgaccacatcaacaagccgctcaagaagaag
gagatcagcaagctgatcaacgcctccttccgccgctgcggcctgcgcgccaccgtggtg
ctggccgaccagctgatgcagaacggcttcaagctggccacccgcgcaggcatctcgatc
gccatgagcgacatgctcattccgaaggccaagcacgacatcgtcgctgcatcgtccaag
gaagtgaaggagatcgaccagcagtacgcctccggtctcgtgaccgccggcgagcgctac
aacaaggtcgtggacatctggggccgcgcaggcgaccaggtctccaaggccatgatggac
cagctcgccacggaagaagtgaccgatcgccacggcaacaagacccgccaggagtccttc
aactccatctacatgatggccgactccggcgcccgcggttccgcagcgcagatccgccag
ctggccggcatgcgcggcctgatggcaaagcccgacggctcgatcatcgagaccccgatc
acggcgaacttccgtgaaggcctgaacgtgctgcagtacttcatctccacgcacggcgcc
cgcaagggtctggccgacacggcgctgaagaccgccaactccggctatctcacccgccgt
ctggtggacgtgacgcaggatctggtggtgaccgaggacgactgcggcaccatcaacggc
gtgaacatgaaggccctggtcgagggtggtgaagtcatcgaaaagctcgccgaccggatc
ctcggccgcgtgctggtcaatgacgtcatcaaccccgagacgggcgacgtgctcttcgct
gccggatatctgctggacgaagatgcggtcgagcgcatcgaggccctgggcatcgacgaa
gtgaaggtccgcaccccgctgacctgcgaaacccgccatggtctgtgcgccaagtgctac
ggccgcgatctgggccgcggtgcactggtgaactccggtgaggctgtgggtgtgatcgcc
gcgcagtcgatcggcgaacccggcacgcagctgacgatgcgcaccttccacatcggtggt
gcagcgtcccgtgctgccgtggcctccggcgtcgaagccaagtccaacggtaccgtccgc
ttccaggcgatgcgttacgtgaccaacgccaagggcgatcagatcgtgatctcccgctcc
ggcgaagtgctcatcaccgacgacgcaggccgcgagcgcgagcgtcacaagatcccgtac
ggcgccacgctggccgtaatggacggcaagaagatcaccgccggcaccaacctcgccacc
tgggatccgctgacccgtccgatcatcacggagtacgccggtcgcgccaagttcgagaac
gtcgaagaaggcctgaccgtagccaagcaggtggacgaagtcaccggcctgtccacgctc
gtggtcatcgacgccaagcgccgcggttcgaccaaggcggtgcgtccgcagatcaagctc
gtggacgaagccggcaaggaagtcacgctggccggcaccgatcaccctgtgaccatcacc
ttcccggtgggcgcgctcatcacggtgaaggatggccaggagatcaagccgggcgaactg
ctcgccaagatcccgaccgaaagccagaagacccgcgacatcaccggcggtctgccgcgt
gtggccgagctcttcgaagcccgctcgcccaaggatgccggcatgctggccgaggtgacg
ggtaccgtgaccttcggcaaggaaaccaagggcaagcagcgtctggtcatcaccgacctc
gacggcaacgcgcacgagttcctgatccccaaggacaagaacgtgctggtgcacgaaggc
caggtggtgaacaagggcgaactgatcgtcgacggtccggccgatcctcaggacatcctg
cgtctgctgggtatcgaggccctggcccgctacatcgtcgacgaggtgcaggacgtctac
cgtctgcagggcgtaaagatcaacgacaagcacatcgaagtgatcgtgcgccagatgctg
cgccgcgtgcaggtgctgtcggcaggcgacaccaccttcatccccggtgagcaggtcgag
cgttcggagcttctcaacgagaacgaccgcgtaatcgccgaaggcaagacgccggccacc
tacgaaaacgtgctgctgggcatcaccaaggcctccctgtccaccgactcgttcatctcc
gcggcctccttccaggagaccacccgcgtgctgaccgaagccgcgatcatgggcaagaag
gacgatctgcgtggcctgaaggaaaacgtgatcgtcggccgtctgatcccggccggtacc
ggtctggcctaccacctcgcccgcaaggagcgcgagaaggccgaggaagccgaacgtctg
gccgccaacgaaacgctgaccatcgaaagcgtgtttggtccctcgaccgacaccgccgaa
gtggctgccgaaggtggcgaggccgcgacgcccgaccagggcgcggccgagtaa
DBGET
integrated database retrieval system
