Piscinibacterium candidicorallinum: ACMDW7_04350
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Entry
ACMDW7_04350 CDS
T10926
Name
(GenBank) ribonuclease catalytic domain-containing protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pcaz Piscinibacterium candidicorallinum
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcaz03016
]
ACMDW7_04350
Enzymes [BR:
pcaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACMDW7_04350
Transfer RNA biogenesis [BR:
pcaz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ACMDW7_04350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
XOD97669
LinkDB
All DBs
Position
962621..964663
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AA seq
680 aa
AA seq
DB search
MYAFFEEDGSYKAGRVLSSTDAALQIELPSGKRSKVKKTAVVFEFAKPEPQALMDQAAQE
AEGIDLDFLYELLPQEEFGALDFAPEYFGGNPTSAQQAALVLRLHGAPHYFHRKGKARYK
PAPPEILKAAKLAVEKKAAQEARRLEMVEEIKAGQMPPEVAAAMPGILFRPDKNGIAYKA
LSEGAAALGVHPARLAVERGALKSAFDLHMQRFLTAAFPKGPGHAPLPEPKLPSLPVAAV
QSFSIDDITTTEIDDAFSVQFNADGTARVGIHIAAPGVAIAPGDAIDSVGRARMSTVYMP
GDKITMLPDATVQAFTLEEGRTMPAVSLYFTAGPDGAATDFETRIEAVPVAANLRHNLLD
ELVTAESLDARSGSYPFAQELALLWRVAQWMSGERDRVRGKPEHNNRADFSFYVDWAADA
PTDASKATVRIETRRRGAPLDKIVSELMILANSTWARQLHEARLPGIFRGQVAGRVRMST
HAGPHEAMGVLHYGWFTSPLRRYSDLVNQRQLLALVEHGAVAALKAPFKPKDADLFAVIS
AFDAAYTSYAEFQSQMERFWCLRWAQQHIAAGDSRVVDAVVVKDDLVRLARAPLYLRVAG
VPVGEGFGRGRPVRIELLSWDEIDLAVEARYVGEGGSAQAEDVDEAEEDAPHAVDAVALP
EVDADANAAPAPAASGAGAA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcattttttgaagaagacggcagttacaaggcgggtcgggtgctctccagcacg
gacgcggcgctgcagatcgaactgcccagcggcaagcgcagcaaggtcaaaaagacagct
gtggtgttcgaattcgccaaacccgagccacaggcgctgatggatcaagccgcgcaggaa
gccgaaggcattgacctcgatttcctgtacgagctgctgccccaggaagaatttggcgcg
ctggacttcgcgcccgagtacttcggcggcaaccccaccagcgcgcagcaggccgcactg
gtgctgcgcctgcacggcgcaccgcactacttccatcgcaagggcaaggcccgctacaag
ccggcgccaccggagattctcaaggccgccaagctggccgtggaaaagaaggccgcgcag
gaagcgcgccgcttggagatggtcgaggaaatcaaggccggccagatgccgcccgaggtc
gccgcagccatgcccggcatactgttccggcccgacaagaacggcatcgcctacaaggcc
ctgtcagagggcgccgcggcgctgggcgttcacccggcgcgcctggccgtggagcgcggt
gcgctcaagagcgcctttgatctgcacatgcagcgctttctcacggccgccttccccaag
ggcccgggccacgcgccgctgccagaacccaagctgccgagcctgcccgtggccgcagtg
cagagcttctcgatcgatgacatcaccaccaccgagatcgacgacgccttctcggtgcag
ttcaacgccgatggcacggcgcgggtaggcatccacatcgctgcgccgggcgtggccatt
gcgccgggcgatgccatcgacagcgtgggccgtgcgcgcatgagcaccgtgtacatgccc
ggcgacaagatcaccatgctgccggacgccaccgtgcaggccttcacgctggaagaaggc
cgcaccatgcccgcggtgagcctgtacttcacggccgggcccgatggcgcggccactgac
tttgaaacgcgcatcgaagcggtgcctgtggccgccaacctgcgacacaacctgctcgat
gaactggtgacggccgagtcactcgatgcgcgcagcggcagctacccctttgcgcaggaa
ctcgccctgctctggcgcgtggcgcagtggatgagcggcgagcgcgatcgcgtgcgcggc
aagcccgagcacaacaaccgcgccgacttctcgttctacgtcgactgggccgcagatgcg
ccgaccgatgccagcaaggcgacggtccgcatcgaaacccgccgccgtggcgcgccgctg
gacaagatcgtgagcgaactcatgatcctggccaacagcacctgggcgcgccagctgcac
gaggcgcgtctgccgggcatcttccggggccaggtggccgggcgcgtgcgcatgagcaca
catgccggtccgcacgaggccatgggcgtgctgcactacggctggttcaccagccccctg
cggcgctacagcgatctggtgaatcaacgccagctcctggcactggtcgagcatggcgcg
gtggccgcgctaaaggcccccttcaagcccaaggacgcggatctctttgccgtcatctcg
gcctttgacgccgcgtacaccagctacgccgaattccagagccagatggaacgcttctgg
tgcctgcgctgggcgcagcagcacattgccgccggcgactcccgggtggtggatgccgtc
gtggtcaaggacgacctcgtgcgcctggcgcgcgcgccgctgtatctgcgtgtggcgggc
gtacccgtgggcgagggcttcggccgtggccggcccgtgcgcatcgagctgctgagctgg
gacgagatcgacttggctgtggaagcccgctacgtgggcgagggcggctccgcccaggcc
gaagatgtggatgaggccgaagaggacgccccccacgccgtggatgctgtcgccttgccc
gaggtggacgccgatgccaacgccgcacctgcacctgcggcatcgggcgccggcgcggca
tga
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