Piscinibacterium candidicorallinum: ACMDW7_07755
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Entry
ACMDW7_07755 CDS
T10926
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcaz Piscinibacterium candidicorallinum
Pathway
pcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMDW7_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaz03019
]
ACMDW7_07755
03009 Ribosome biogenesis [BR:
pcaz03009
]
ACMDW7_07755
Enzymes [BR:
pcaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACMDW7_07755
Messenger RNA biogenesis [BR:
pcaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACMDW7_07755
Ribosome biogenesis [BR:
pcaz03009
]
Prokaryotic type
rRNA processing factors
ACMDW7_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
XOD98305
LinkDB
All DBs
Position
complement(1720727..1723639)
Genome browser
AA seq
970 aa
AA seq
DB search
MKRMLFNATHAEELRVAIVDGQKLVDIDIETAGKESRKSNIYKGVITRIEPSLEACFINY
GEERHGFLPFKEVARQYFRDGVDVRSAKIQDALKEGQEVLVQLEKEERGNKGAALTTFIS
LAGRYLVLMPNNPKGGGVSRRIEGDDRNELREKLDQLKMPEGMSVIARTAAIDRTAEELQ
WDLNYLLQLWKAVDDASKSASGAFLIYQESSLVIRAIRDYFQPEIGEILIDTDDIAEQAQ
QFMAHVMPDMVNRVKRYRDDIPLFSRFQIEHQIETAYSRTVPLPSGGSIVIDHTEALVAI
DVNSARATKGSDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMEEGKNQKAVEQR
LKDALHYDRARVQMGRISRFGLVELSRQRLRPALNEGSHITCPRCNGVGVIRDTESSALH
VLRIIQEESMKENTAAVFAQVPVDVATFLLNEKRVDIAKLEARHRITVTLIPNKHIETPH
YKLERVKHDDPRLEDPKPTYEMPELPEEVNYFDAKAEREEKPRQVAKVKGIVPDQPAPQR
PPEAAPAPIATPAPAMAKTVPIAPRPAAPAPEPKGFFARMFGWLTGGKPQEAQPDIRGAV
AQTAQAAQAAQQPTAAASGERGPRGGRDGRDNRDGRGRNGERRDGRRDGRGEGRGEGRGE
GRNDGRSDPRGERRNRRDGEGQSDGSRQRTAEPARLSEGAAPADAAVPARAEGDRGERSG
RGRRGRGERADRDAARKDDIGQQPADELDASAAAAAAVIAGAAAAAAAETQATEADSTEA
VQPGSDVSQAGAETGEQGERKRRRRRRGGRGRRDEQGNGADGLDAAEGTDSADDAATDEQ
DEAASASPVVATTDVAQAASPAAVPAPAAAPMAVVTPAAAARADRSTVRAPQVRVEGTFA
TLDKGALEIVVAKAGLNWVHTDGDKHAQVQAKMAAIPRPVRVPRERPVLPPLSTEPLIQV
ETKPEHRKPA
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaacgcaacgcacgcagaagaactgcgcgttgccatcgtcgac
ggccaaaagctcgtcgacatcgacatcgaaaccgcgggcaaggaaagccgcaagtccaac
atctacaagggcgtcatcacccgaatcgagccatcgctcgaagcctgtttcatcaactac
ggcgaggagcgccacggtttcctgcccttcaaggaagtcgcccgccagtatttccgcgac
ggcgtggatgtgcgcagcgccaagatccaggatgcgctcaaggaaggccaggaagtcctc
gtccagctcgaaaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaaccccaagggcggcggtgtatcgcgc
cgcatcgagggcgacgaccgtaacgaactgcgcgagaagctcgaccagctcaagatgccc
gagggcatgagcgtgatcgcgcgcaccgctgccatcgaccgcaccgccgaagaactccag
tgggacctgaattacctgctgcagctctggaaggccgtggatgacgccagcaagtctgcc
agcggcgccttcctgatctaccaggagtcgagcctcgtcatccgcgccatccgggactac
ttccagcccgagatcggcgaaatcctgatcgacacggacgacatcgcggaacaggcccag
cagttcatggcccacgtgatgccggacatggtcaaccgcgtgaagcgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgagcaccagatcgagacggcctactcgcgcacg
gtccccctgccttcgggcggctcgatcgtgatcgaccacaccgaggcgctggtcgccatc
gacgtgaactcggcgcgcgccaccaagggcagcgacatcgaggagactgcgacccgcacc
aacctcgaagcggccgacgaagtggcccgccagctgcggttgcgcgacctgggtggcctg
atcgtcatcgacttcatcgacatggaggaaggcaagaaccagaaggcggtcgagcaacgc
ctgaaggatgccctccattacgaccgagcccgcgtacagatgggccgtatcagccgcttt
ggcctggtggaactgtcgcgccagcgcctgcgccctgcgctgaacgaaggcagccacatc
acctgcccgcgctgcaacggggtcggcgtgatccgcgacaccgagtcctcggcgctgcac
gtcctgcgcatcatccaggaagagtccatgaaggagaacacggccgccgtgttcgcccag
gtgccggtggacgtggccaccttcctgctcaacgaaaagcgtgtggacatcgccaagctc
gaggcgcgccatcgcatcaccgtcacgctgatccccaacaagcacatcgagacgccgcac
tacaagctcgagcgcgtcaagcacgacgacccgcgccttgaggatccgaagccgacctat
gaaatgccggagttgcctgaagaggtgaactacttcgacgcgaaggcagagcgcgaggaa
aagccgcgccaggtggccaaggtgaagggcatcgtgcccgaccagcctgcgccccagcgc
ccgcccgaggcagcacctgcgccgatcgcgaccccggcgcccgccatggccaagaccgtg
ccgatcgcaccgcgccccgccgcgcctgcgccggaacccaagggcttcttcgcccgcatg
tttggttggctgacgggtggcaagccgcaagaagcgcagccagacattcgcggcgccgta
gcacagaccgcacaggctgcacaggctgcacagcagccgaccgctgctgcgagcggcgag
cgcgggccgcgtggtggccgcgacggccgcgataaccgtgacggccgcggccgcaacggc
gagcgccgcgacggccgccgcgatggtcgtggcgagggtcgcggtgaaggccgaggcgag
ggtcgtaatgatggccgcagcgatccgcgtggtgaacgccgcaaccgccgtgatggtgaa
ggccagtccgacggcagccgccagcgcactgcggagcccgctcgcctctccgaaggtgcg
gcgccggcagatgcagcggtaccggcgcgtgccgagggcgatcgcggcgaacgctccggg
cggggccgccgcggccgcggtgaacgcgcagaccgtgatgcagcccgcaaggacgatatt
gggcagcagccggccgatgagctcgatgccagcgcagcagcagcggctgccgtgatcgct
ggcgcagccgctgctgccgctgccgaaacccaggctaccgaggccgacagcaccgaagca
gttcaaccgggttcggatgtatcgcaggccggagctgaaacgggtgagcagggtgagcgc
aagcgccgtcggcgccgccgtggtggccgaggccgccgcgacgagcaaggcaatggcgcg
gatggtttggacgccgccgagggtaccgacagcgccgacgacgcagcaaccgacgagcag
gacgaagccgcttcggccagcccggtggtcgcgacgacggatgtggcacaggctgcgtcg
ccggctgccgtccctgcgcctgcggccgcacccatggccgtggtcaccccggcagcagcc
gcgcgcgcagatcgcagcaccgtgcgtgcaccgcaggttcgggttgaaggcactttcgcc
actctggacaagggcgcactggagatcgtggtcgccaaagcaggcttgaactgggtccac
acggacggcgacaagcatgcacaggtgcaagcgaagatggccgcaatccctcgcccggta
cgcgtgccgcgtgagcgaccggtcctgccgccgctgtccacggagcctctgatccaggtc
gaaaccaagcccgagcaccgcaagccggcttga
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