Piscinibacterium candidicorallinum: ACMDW7_08795
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Entry
ACMDW7_08795 CDS
T10926
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcaz Piscinibacterium candidicorallinum
Pathway
pcaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACMDW7_08795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcaz03400
]
ACMDW7_08795 (mfd)
Enzymes [BR:
pcaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACMDW7_08795 (mfd)
DNA repair and recombination proteins [BR:
pcaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACMDW7_08795 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
ERCC3_RAD25_C
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XOD95251
LinkDB
All DBs
Position
1947892..1951386
Genome browser
AA seq
1164 aa
AA seq
DB search
MAENSSSYSPLSAQLARMGAGDSFAAHPGPGSADAWCLARLLPDVLARGQRLTVVTASAQ
DAQRLHDELTYLAAELSADPTRKPSIRLLPDWETLPYDSFSPHQDLISERLATLHETVSG
NVDVLITAASTALHRLCPPGFIEGYTFFFKQGGKLNEQQLRDQLVRAGYNHVGQVLSPGE
YSVRGGLIDLFPMGSALPYRLDLFDDSIESIRTFDPDTQRSLYPVKEVRLLPGREFPMDE
ASRAAFRKRFREVFEGDPTKAVIYKDMGNGIASAGIEYWLPLFFEQAATLFDYLPAGSLL
ATVGDVNEAIKRFHTDTQERYKLMRADRERPLLPPDQLFLTAEHFFANVRGFARLALDAA
SNHAPLAAPLPNLAIDRKREVPLAAFLDWQHKTPYRVLIVAESAGRRETMATLLRDNELP
VSEVESFAQFTADMRAAIIVAPLASGFVLPGEGIAVVTEAELYAASGRTGRKKQEATTNI
DMMIRDLAELKVGDPVVHAQHGIGRYHGLESMDLGEGVMEFLHLEYAGGTKLYVPVSQLH
LIGRYSGMNPEDAPLHQLGSGQWEKARKKAAAQARDTAAELLDLYAKRALRQGHAFNFDP
ADYVRFAEGFGFEETADQAAAIAAVMGDMTRGKPMDRLVCGDVGFGKTEVALRAAFMCVA
GGKQVAVLAPTTLLAEQHFQTFSDRFADWPVNIVELSRFKTAKEVKDAVERINTGQVDIV
IGTHKLLSSSVKYPRLGLVIIDEEHRFGVRHKEALKSLRAEVDVLTLTATPIPRTLGMAM
EGMRDLSVIATAPQRRLAIKTFVRREGDGIIREAVLRELKRGGQVYFLHNEVETIENRKA
KLTELLPEARIVVAHGQMPERELERVMREFTAQRANILLCTTIIETGIDIPTANTIIIHK
ADRFGLAQLHQLRGRVGRSHHQAYAYLLVSSEEGLTKQAKQRLEAIQSMEELGSGFYLAM
HDLEIRGAGEVLGENQSGDMQEVGFQMYVDMINLAVRALKRGEEPDFEAPLTLGIEVNLH
LPALLPTDYCGDVHERLSLYKRLSAAETTEALDSLHEEIIDRFGKLPEAAQALLDTHRLR
VMGKALGVAKIDAHAESITLQFGPKVPFEPYAIIELVQKNKHIKLAGQDKLRITGSSPDL
AARVGNTRAALRLLGKSAQVEVTA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaactcatcctcctactcaccactttccgcccagctggcacgcatgggcgcg
ggcgacagctttgcggcgcaccccggcccaggcagcgcggacgcctggtgcctggcgcgg
ctgctgccggatgtgctggcgcgcgggcaacggctgactgtcgtcaccgccagcgcgcag
gacgcacagcgcctgcatgacgagctcacctacctggccgcagagctgagcgcagacccc
accaggaaacccagcatccgcctgctgccggactgggaaacgctgccctacgacagcttc
tcgcctcaccaggacctgatctccgagcgcctggccaccctgcatgagaccgtgagcggc
aacgtggacgtgctgatcacggccgcatccacggccctgcaccgcctctgcccgcccggc
ttcatcgagggctacaccttcttcttcaagcagggtggcaagctcaacgaacagcagctg
cgcgatcaactggtgcgcgccggctacaaccatgtgggtcaggtgctctcgccgggcgaa
tacagcgtgcgcggcgggctgatcgacctctttcccatgggcagcgccctgccctaccgg
ctggacctgttcgacgacagcatcgaatccatccgcaccttcgaccccgacacccagcgc
agcctgtatccggtcaaggaagtgcgcctgctgccgggccgcgaattcccgatggacgag
gccagccgcgcggcgtttcgcaagcgtttccgcgaggtgttcgagggcgacccgaccaag
gccgtgatctacaaggacatgggcaacggtattgccagtgcgggcattgaatactggctg
ccgctgttcttcgagcaggcggccacactgtttgactacctgcccgctggcagcctgctg
gccacggtgggcgacgtgaatgaggcaatcaagcgcttccacaccgacacgcaggagcgc
tacaagctcatgcgcgccgaccgcgagcgcccgctgctgccgccggaccagctctttctc
actgccgagcacttctttgcgaacgtgcgcggctttgcccgcctggcgctggatgccgcg
agcaaccacgcgccgctggccgcgcccctgcccaacctggcgatcgaccgcaagcgcgaa
gtcccgctcgccgcgttcctggactggcagcacaagacgccgtaccgcgtgctgatcgtg
gccgaaagcgccggccggcgcgagaccatggccaccctgctgcgggacaacgagctgcca
gtcagcgaggtggagagcttcgcgcagttcaccgcagacatgcgcgcggccatcatcgtc
gcgccgctggccagcggctttgtgctgcccggcgaaggcattgcagtcgtcacggaagcg
gaactctatgccgcctccggccgcaccggccgcaagaagcaggaggccaccaccaacatc
gacatgatgatccgcgatctggcggagctgaaggtcggcgacccggtggtgcacgcccag
catggcatcggccgctatcacgggctggagtccatggatttgggcgaaggcgtgatggag
ttcctgcacctggaatacgcgggcggcaccaagctctacgtgccggtgagccaactgcac
ctcatcggccgctattccggcatgaacccggaggacgcacccctgcaccagctgggcagc
ggccagtgggagaaggcgcgcaagaaggccgccgcacaggcgcgcgacaccgctgcagag
ctgctggacctctatgccaagcgcgccctgcgccagggccatgcattcaacttcgacccc
gccgactacgtgcgctttgccgagggcttcggcttcgaggagaccgccgaccaggccgct
gcgattgcggccgtgatgggcgacatgacgcgcggcaagcccatggaccgcctggtgtgc
ggcgacgtgggtttcggcaagaccgaggtcgccctgcgtgccgccttcatgtgcgtggct
ggcggcaagcaggtggccgtgctggcgcccaccacactcctggccgagcagcatttccag
accttctctgaccgctttgcggactggccggtgaacatcgtggagctgtcgcgcttcaag
accgccaaggaggtcaaggacgcggtggagcgaatcaatacgggccaagtggacatcgtc
atcggcacgcacaagctgctgtcctcgagcgtgaagtatccgcgcctcgggctggtgatc
attgacgaggagcaccgcttcggcgtgcgccacaaggaagcgctcaagagcctgcgcgcc
gaggtggatgtgctcacgcttacggccacgccgattccgcgcaccctgggcatggccatg
gaaggcatgcgggatctgtcggtgatcgccactgcgccgcagcgccgcctggcgatcaag
acctttgtgcgccgcgagggcgatggcatcatccgcgaggcggtgctgcgcgaactcaag
cgcggcgggcaggtgtacttcctgcacaacgaggtcgagaccatcgagaaccgcaaggcc
aagctcaccgagctgctgcccgaggcgcggatcgtggtggcgcacggccagatgcccgag
cgcgagctggagcgcgtgatgcgcgagttcaccgcccagcgcgccaacatcctcttgtgc
accaccatcatcgagaccgggatcgacatcccgacggccaacaccatcatcatccacaag
gccgaccgctttggcctggcccagctgcaccagctgcgcgggcgcgtgggccgcagccac
caccaggcctatgcctacctgctggtgagcagcgaagagggcctgaccaagcaggccaag
cagcgcctggaggccatccagagcatggaagaactgggctccggcttctatctggccatg
cacgatctggagatccgcggcgccggcgaggtgctgggcgagaaccagagcggcgacatg
caggaggtcggcttccagatgtacgtggacatgatcaatctggccgttcgggcccttaag
cgcggcgaggagccggacttcgaggcgccgctgaccctgggcatcgaggtcaatctccat
ctgcccgctcttctgcccaccgactactgcggcgatgtgcatgaacgcctgagtctgtac
aagcggctttcggccgccgagaccaccgaagcgctggacagcctgcacgaagagatcatc
gaccgcttcggcaagttgcccgaggcggcgcaggccctgctcgatacgcaccgcctgcgc
gtgatgggcaaggcactgggcgtggcgaagatcgacgcccacgcggagtccatcaccctg
cagttcggccccaaggtgcccttcgagccctatgcaatcatcgaactcgtgcaaaagaac
aaacacatcaagctcgccgggcaggacaagctgcgcatcaccggcagctcgccggacctg
gctgcgcgcgtgggcaacacccgcgcggcgctgcggctgctgggcaagtctgcacaggtg
gaggtgacggcatga
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