Piscinibacterium candidicorallinum: ACMDW7_09290
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Entry
ACMDW7_09290 CDS
T10926
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcaz Piscinibacterium candidicorallinum
Pathway
pcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMDW7_09290 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcaz03019
]
ACMDW7_09290 (rnr)
03016 Transfer RNA biogenesis [BR:
pcaz03016
]
ACMDW7_09290 (rnr)
Enzymes [BR:
pcaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACMDW7_09290 (rnr)
Messenger RNA biogenesis [BR:
pcaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACMDW7_09290 (rnr)
Transfer RNA biogenesis [BR:
pcaz03016
]
Prokaryotic type
tRNA degradation factors
ACMDW7_09290 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
ATR1_N
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
XOD95345
LinkDB
All DBs
Position
complement(2063341..2065788)
Genome browser
AA seq
815 aa
AA seq
DB search
MPRKTTTTANRNAGTGLSAESIVTALAAAQAPVALPDLVSSMGLAAIETAQVEALLETLQ
REGRVLVNRKGHVLLPSRIDLLAGKVQGHRDGFGFLIRDDGGPDLYLPAKEMTKVLHGDR
VLAKQIGVDRRGKPEGVIAEVIERRTNKLVGRFIAERGITVVVPEDQRIKHDILVPPTES
GGAQPGQVVMVEIVQQPSRYSQPLGRVVEVLGEVDDPGMEIEIAVRKFDVPYEFSDAARK
QAAALPDVVRDVDLAGRVDLRDVPLVTIDGEDARDFDDAVYCEPCTIGRGKTAQPGFRLL
VAIADVSHYVQDGDALDADARLRSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCD
MVVTAEGAIHAYQFYPGVMHSAARLTYNEVWAILSQPTAPAREKRKAIIPQLEQLYEVYR
AFAKARVARGAIDFETVETYIECNAVGRIERIIPRVRNDAHKLIEECMLAANVCTADFIH
RNKQLALYRVHEGPTPDKLQNLREFLKTVGLLLTGGDDPQAKDYAALMKKITPRPDAQLL
QTMLLRSLQQAHYSPDNAGHFGLSYEAYAHFTSPIRRYPDLLVHRVLKAILGKQSYTPSG
DAGERKLPAPRSKKEAAAFAHDRWDKLGLVCSANERRADEASNDVTAWLKCYYMRDRVGE
EFSGTISGVAPFGVFVTLDSLYVDGLVHVSELGTEYFQFNESMHELRGEHSGIRYRLTDR
IHVQLARVDIEARRMDFRLVKSPGAQAEQADDSGAGRKSARPAKHLKGPKAKTPAVKQAI
ESRKQGKQQETAFKKGAATKNMARRSAAKNKRGRR
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaaagacaacaacaacggccaaccgcaacgcgggcacggggctgagcgctgaa
tccattgtgacggcgctggccgccgcgcaggcgcccgtcgcgctgccggatctcgtcagc
agcatgggccttgcggccattgaaaccgcacaggttgaagcactgctcgaaacccttcaa
cgtgagggccgggttctggtgaaccgcaaggggcacgtattgctgccctcgcgaatcgat
ctgctcgccggcaaggtgcagggccatcgggacggcttcggcttcctgatccgtgacgat
ggcgggccggatctctacctgcccgccaaggaaatgaccaaggtgctgcatggcgaccgc
gtgctcgccaagcagatcggcgtggaccggcgcggcaagcccgaaggcgtgattgccgag
gtcatcgagcgccgcaccaacaagctggtcggccgcttcatcgcggagcgcggcatcacg
gtggtggtgccggaagaccagcgcatcaagcacgacatcctcgtgccgcccacagagagt
ggcggcgcacagcccggtcaggtggtgatggtcgagatcgtgcagcagccttcgcgctac
agccagcccttgggccgcgtggtcgaggtgctgggcgaggtcgatgacccgggcatggaa
atcgagattgccgtgcgcaagtttgatgtgccctacgagttcagcgacgccgcgcgcaag
caggccgcggcgctgcccgatgtggtgcgcgatgtggatctggccggccgcgtggacctg
cgtgatgtcccgctggtcaccatcgacggcgaggacgcgcgcgacttcgacgacgcggtg
tactgcgagccctgcacgatcggccgcggcaagaccgcccagccgggcttccggctgctg
gtggcgattgcggacgtgagtcactacgtgcaggacggcgacgcgcttgatgcagatgcc
cgtctgcggtccaccagcgtgtacttcccgcgccgggtcatccccatgctgccggagaag
ctttccaacggactgtgctcgctcaatccggacgtggaccgcctgtgcatggtctgcgac
atggtggtcacggccgaaggcgccatccacgcctatcagttctacccgggagtcatgcat
tcggccgcgcggctgacctacaacgaggtatgggccatcctgtcgcaacccaccgcgccg
gcgcgcgaaaagcgcaaggccatcattccgcagcttgagcagctctatgaggtgtaccgc
gcctttgccaaggcccgtgtggctcgcggcgccatcgacttcgagacggtggaaacctat
atcgagtgcaacgccgtgggtcgcatcgagcgcatcatcccgcgcgtgcgcaacgatgcc
cacaagttgatcgaggagtgcatgctggcggccaacgtctgcacggccgacttcatccac
cgcaacaagcagctggctctgtaccgcgtgcatgaaggccccacgcccgacaagctgcag
aacctgcgcgaatttctgaagaccgtcggcctgctgctcaccggcggtgacgacccgcag
gccaaggactatgccgcgctgatgaagaagatcacgccgcggccggacgcgcagctgctg
cagaccatgctgctgcgcagcctgcagcaggcgcattacagcccggacaatgctggccac
ttcgggctgtcctacgaggcctacgcccacttcacctcgccgatccgccgctatccggac
ctgttggtgcaccgcgtgctcaaggccatcctgggcaagcagagctacacgcccagcggc
gatgccggcgagcgcaagctgcccgcaccgcgcagcaagaaggaagctgcggcctttgca
catgaccgttgggacaagctgggcctggtctgctcggccaacgagcggcgcgccgacgaa
gccagcaacgacgtgaccgcctggctcaagtgctactacatgcgcgaccgcgtgggcgag
gagttcagcggcaccatcagcggcgtggcgccgttcggcgtgttcgtcacgctcgattcg
ctctatgtggacggcctggtgcacgtcagcgaactcggcaccgagtacttccagttcaac
gagagcatgcacgagctgcgcggtgagcacagtggcatccgctatcgcctgaccgaccgc
atccacgtgcagctggcgcgcgtggacatcgaggcacgccgcatggacttccggctggtg
aagagccccggtgctcaggctgagcaggcggacgactcaggtgcgggccgcaaatctgct
cggccggccaagcatctcaagggccccaaggccaagacgccggcggtcaagcaggcgatc
gagtcgcgcaagcagggcaagcagcaggaaacggccttcaagaagggcgctgccaccaag
aacatggcgcgccgcagcgccgccaagaacaagcgcggacgccgctga
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