Piscinibacterium candidicorallinum: ACMDW7_12440
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Entry
ACMDW7_12440 CDS
T10926
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcaz Piscinibacterium candidicorallinum
Brite
KEGG Orthology (KO) [BR:
pcaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcaz03016
]
ACMDW7_12440
Enzymes [BR:
pcaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACMDW7_12440
Transfer RNA biogenesis [BR:
pcaz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACMDW7_12440
Prokaryotic type
tRNA splicing ligases
ACMDW7_12440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XOD95920
LinkDB
All DBs
Position
2742722..2743927
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AA seq
401 aa
AA seq
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MQELMPQVRGWVQGLEIEPAALSQLRNISKLPILAGPMAVMPDVHMGIGATVGSVIPTKA
AVIPSAVGVDIGCGMLAARTQLRAEDLPTSLAKLRAQIERDIPVGFDAHKDMPRVKSIGL
EGMKLDQRRVALEDRFQKLKIREYLGRFEESRLWKQCGTLGGGNHFIEVCLDEDGSVWLM
LHSGSRNIGKTIGECAINLAKDQARELQRNLPDRDLAWLDEGTPQFEAYIEAMLWAQDYA
ALNRDIMFVLLRAAAEKALGRPIQITFESVNCHHNFTTVEEHFGERMWITRKGAVRAQAG
QFGIIPGSMGTRSYIVRGKGNPMSYCSCSHGAGRRMSRGEAKRLFDLEALKAQTEGVECR
KDGGVLDEIPAAYKDIDQVMAAQAELVDVMHTLKQVLCIKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaactcatgccccaagtgcgcggatgggtgcaggggctggagatcgagccggcc
gccctgagccagttgcgcaacatctcaaagctgccgatcctggccggtccgatggccgtg
atgcctgacgtccacatgggtatcggtgcgaccgtcggctccgtgatcccgaccaaagct
gccgtgattcccagcgccgtgggcgtggacatcggctgcgggatgctcgctgcacgcacg
cagctgcgcgccgaggatctgccgacctcactggccaagctgcgcgcacagatcgaacgc
gatattccagtaggtttcgacgcccacaaggacatgccgcgcgtgaagtcgatcggactc
gagggtatgaagctcgatcagcgccgggtcgccctggaggatcgcttccagaagctgaag
atccgcgagtatctgggccggttcgaggaatcccgcctgtggaagcagtgcggaacgctg
ggcggcggtaaccacttcatcgaggtctgtctggatgaagacggctcggtgtggctgatg
ctgcactcgggctcgcgcaacatcggcaagacgattggtgagtgcgccatcaacctggcc
aaggaccaggctcgcgagctgcagcgcaacctgccggaccgcgacctggcctggctggac
gaaggtacgccgcagttcgaggcctacatcgaagcgatgctctgggcccaggactacgcc
gcgctgaaccgcgacatcatgttcgtgctgctgcgtgcagccgccgagaaggccctgggt
cgtccgattcagatcaccttcgagtcggtgaactgccaccacaacttcaccacggtggaa
gagcacttcggtgagcgcatgtggatcacccgcaagggggccgtgcgtgcacaggcggga
cagttcgggatcatcccgggctcgatgggtacgcgcagctacatcgtgcgtggcaagggc
aatccgatgtcgtactgctcgtgctcgcacggggctgggcgccgcatgtcgcgcggcgag
gccaagcgtctgttcgatctggaggccctcaaggcccagaccgagggcgtggagtgccgc
aaggacggcggggtccttgatgagattccggcggcctacaaggacatcgaccaggtgatg
gctgcgcaggctgaactggtcgacgtcatgcacaccctgaagcaggtgttgtgcatcaag
ggttga
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