Plasmodium chabaudi: PCHAS_0101600
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Entry
PCHAS_0101600 CDS
T01108
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_0101600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0101600
03041 Spliceosome [BR:
pcb03041
]
PCHAS_0101600
03009 Ribosome biogenesis [BR:
pcb03009
]
PCHAS_0101600
03016 Transfer RNA biogenesis [BR:
pcb03016
]
PCHAS_0101600
Enzymes [BR:
pcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCHAS_0101600
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PCHAS_0101600
Spliceosome [BR:
pcb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PCHAS_0101600
Complex C
U4/U6.U5 tri-SnRNP related factors
PCHAS_0101600
Ribosome biogenesis [BR:
pcb03009
]
Eukaryotic type
Pre-60S particles
Helicases
PCHAS_0101600
Transfer RNA biogenesis [BR:
pcb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PCHAS_0101600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
nSTAND3
Chlorophyllase
Motif
Other DBs
NCBI-GeneID:
3499235
NCBI-ProteinID:
XP_746108
UniProt:
A0A4V0K0V3
LinkDB
All DBs
Position
1:67036..71036
Genome browser
AA seq
1293 aa
AA seq
DB search
MSENIDDLFNVFEEDETKTNLLNNGKGLDDLNVIAEEQYGQDNMAYTNERIANNKTTAGE
NNENKIEMEINYDSSEYNAPIDYKINVDNIISNHKSNNKIKDQVKEEIYNEVGSINGNNN
LLNNKIRKTNEENNKTKAHKEPIREKLIENSKTINNDDVLVLEEFGSDVNCIHKCVRPQS
YVHNKLNESITPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLR
DKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGS
SLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIK
NQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKNFKRDNFIKAVNALKDRSALDENN
HSGGNNKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATTLNKVNLTDDS
EKAVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESL
LKVLFSTETFSMGINMPAKTVVFTSLKKFDGVEKRLITSGEYIQMAGRAGRRGLDDRGIV
IIMLDSPLHWTDAEKLFVGEANRLISQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMK
KNLFEQIFASKKVEQKSQEILNILTNIYLDQNGEEFTKAYLLNQVKTNDVETILKNINVK
NEGTPYLLQNNDPNDPKTINDYNNSEPSNTELKNYITIFSEISNYYKTRNTLVELGENYR
SLLTSKKNIAQYLTMGRLLYAVEDDMKWGWCICIEGKMTEEKYNTNHKKNSAGYNRNTGN
GNHIIGYDSNHTDSCNDTQFNKKNSVEDNRNNTNILVVECLVPYVQNKKRKLPQNDDDDD
GENSQKRDLEFLPAHDRLKAQWKVMTFYIKCIYQISAVVLNIEKPFDKSSEEEIEKVRNK
YNTMVSCLKGENNIPVISPNQMNIKDDAFFKIVKNIYYYENLLNKNKLLNNKNLNRYYQL
YSKYVALQFEKNILDCSIEQCKFIVLKKELNNMLILLESLNYIEITYKTHEKNQINDQPN
HSESENYQNQIDTNNEKLLTQNGTHNDITNKNNNDEKNYVVTMKGQIASAILSVDELVIS
ELFFSNFFSKYTYDYICAFLSCFVYDESSKEITINDPILIEGYQQITKTATIIANKMNQC
GMNINVKEYLEKFKSAIMPIVLLWARGHSFMDILADSQIYEGSIIRTLRRLDELLRQMIC
AFRGINNDNMCETLTTATKKLRRGIPFSPSLYL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatattgatgacttatttaatgtttttgaggaggatgagacaaaaacaaac
ctattaaataatggcaaaggactcgacgatctaaatgttattgcagaagagcaatatggt
caagacaatatggcctatacaaacgaacggattgcaaataacaaaacaacagcgggcgaa
aataatgaaaataaaattgaaatggaaataaattacgatagctccgaatataatgcccca
atagactacaagataaatgttgacaatataataagcaatcataaaagtaataataaaata
aaagatcaagttaaagaagaaatatataatgaggtaggaagtataaatggaaataataat
ttgcttaataataaaataagaaaaacgaatgaagaaaataataaaacaaaagcacataaa
gaacctattcgggaaaaactaattgaaaatagcaagacaataaataatgatgatgtttta
gttttagaggaatttggtagcgatgtgaattgcatacataagtgtgttagacctcaaagc
tatgtacataataaattaaatgaatctataacacctgctagaacatataaatttgagtta
gatacttttcaaaaaaaatcaatagaatgcttagaaagaaatgaaagtgttttagtatct
gctcatacatctgctgggaaaaccgttatagcagaatatgcaatagcattaggattgaga
gataagcaaagagtaatttatacaagtcctataaaagcattaagtaatcaaaaatataga
gatttgagtgaagaatttaaagatgtaggattaattacaggtgatatatcaataaatcca
gaagcatctataatagttatgacaacagaaattctgagatctatgctatatcgaggatct
tcattaacaaaagaagttaaatgggtcatatttgatgaaattcattatatgagagataga
gatagaggtgttatatgggaagagactattatattgttgccattaatggttcgattcatt
ttcttaagtgctaccataccaaatggtatacagtttgctgaatgggttagtagtattaaa
aaccaagcatgccacattgtgtatacagattataggcctacgcctcttcaacattatatt
tatcctacatctagtgagagtgtatttttaatatgtgatgaaaataaaaattttaaaaga
gataattttataaaggcggttaacgcactgaaagatagaagcgcattagacgaaaataac
catagtggtggtaataataaatttaataaacgtatgagaaaaaatacatatgatattgaa
aaaattgttcaaatgtgccactctcgtaattatactcctttaattattttcgcattttca
aagaaagaatgcgaagttaatgctacaacattaaataaggttaatttaactgatgattca
gaaaaagcagtcataaaagaattatatgaaaatgctatccaaatattagcagatgacgat
agagcattaccacaagtgcagtttattttaccattattattaagagggattggaatacat
catgggggattgttaccaattattaaagaaattatagaaattatgtttcaagaatcatta
ttaaaagttttatttagtactgaaacattttctatgggtataaatatgccagccaaaaca
gtcgtatttacatcactaaaaaaatttgatggggtagaaaaaagattaattacatcaggt
gaatatattcaaatggcgggaagagctggaagaagaggactagatgatagaggtattgtt
attattatgctagatagcccattacattggacagatgctgaaaaattgtttgtaggcgaa
gctaatcgattaatcagccaatttcatttaggttataatatgatattaaatttattaaga
atcgaaggtattacaccagaatttatgatcgaaagatcttttatccaatatcaaatgaaa
aaaaatttgtttgaacaaatctttgcatcaaaaaaagttgaacaaaaaagtcaagaaatt
ttaaatatattgacaaatatttatttagatcaaaatggggaagaatttactaaagcttat
ttattaaatcaagttaagacaaatgatgtggaaacaattttaaaaaatataaatgtaaaa
aatgaaggaacaccttatttacttcaaaataatgatccaaatgatcccaaaacaataaat
gattataataatagtgaaccttcaaacactgaactcaaaaattatattactatattttct
gaaatatctaattactataaaacacgaaatacacttgttgaactaggggaaaattataga
tcattattaacatctaaaaaaaatatagctcaatatttgaccatgggtagattactatat
gctgttgaggatgacatgaagtggggatggtgtatttgtattgaagggaaaatgactgaa
gaaaaatataacactaatcataagaaaaatagtgcaggatataatcgtaatacaggaaat
ggtaatcatatcattggatatgatagcaatcacaccgatagttgcaacgatacacaattt
aataaaaaaaactctgtagaagataatagaaataatacaaacatattagtcgtagaatgt
ttagttccctatgttcaaaacaaaaaacgaaagttacctcaaaatgatgatgatgatgat
ggtgaaaattcccaaaaaagggatttagaatttttaccagctcatgatagattaaaagct
caatggaaagtcatgacattttatataaaatgcatatatcaaatatcagcagttgtttta
aatatagaaaaaccatttgataaatcttctgaagaagaaattgaaaaagttagaaataaa
tataatactatggtaagctgcttaaaaggcgaaaacaatataccagttattagtccaaat
caaatgaatattaaagatgatgcattttttaaaattgttaaaaatatttattattatgaa
aatttattaaataaaaataaattattaaataataaaaatttaaatagatattatcaatta
tatagtaaatatgttgctttgcaatttgaaaaaaacatactcgattgcagtattgaacaa
tgtaaatttattgtcttaaaaaaagaattaaataatatgctcatcttattagaaagctta
aactatattgaaattacatataaaactcatgaaaaaaatcaaataaatgatcaaccaaat
cattccgaaagcgaaaattaccaaaaccaaattgatacaaacaacgaaaaattgcttaca
caaaatggcactcataatgatatcactaataaaaataataatgacgaaaaaaattatgtt
gttacaatgaaaggacaaatagctagtgcaattttaagtgtagatgaattagttatatct
gaattatttttttcgaattttttcagtaaatacacttatgattatatatgcgcattctta
tcatgttttgtatatgatgaatcaagtaaagaaattaccattaacgaccctatacttatc
gaaggatatcagcaaataactaaaactgcaacaataatagctaataaaatgaatcaatgt
ggaatgaatataaatgtaaaagaatatttggaaaaatttaaatcagccattatgcctatt
gttttgttatgggctcgtggtcactccttcatggatattctcgcagattcacaaatatat
gaaggatcaataataagaacattaagacgtttggatgaactactaagacaaatgatttgc
gcatttagaggaattaataatgataatatgtgtgaaaccttaaccaccgctacaaaaaag
ttgcgccggggaattccattttcaccttccctctatttataa
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