Plasmodium chabaudi: PCHAS_0109800
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Entry
PCHAS_0109800 CDS
T01108
Name
(RefSeq) transcription elongation factor SPT5, putative
KO
K15172
transcription elongation factor SPT5
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
PCHAS_0109800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcb03021
]
PCHAS_0109800
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0109800
Transcription machinery [BR:
pcb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
PCHAS_0109800
RNA polymerase I system
PCHAS_0109800
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
PCHAS_0109800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
KOW4_SPT5
KOW5_SPT5
KOW2_Spt5
SH3_KIN17_C
KOWx_SPT5
KOW1_SPT5
Motif
Other DBs
NCBI-GeneID:
3491108
NCBI-ProteinID:
XP_738075
UniProt:
A0A4V6M8K2
LinkDB
All DBs
Position
1:complement(372930..376373)
Genome browser
AA seq
1147 aa
AA seq
DB search
MGKTSDEEGAELFNDEINKPNEEEEDDEEVRDSEENESDEDISQSKKKRKKINHTVSFVD
NEADEEDDEYNDDDDDDDDIDYDKITGNKTGNKKRKVGKNKYVSTFLDTEAQVGDDEEEE
EYASSYVDEFEEAKRLEKKKLYETKLKSGTNHLAQAINKLSQRYEHEKDLKDGASDDETL
TDEEMSEDEEYFDEGEGLSAFDSPKMWLIKLFRNGSERTLAMGIYYKYMKLQSSDFNIKG
IYVSDDLKGYIYIEADSLYMLKRFLLGFKFINLNDISIVPVQELTSIFAMSHSKVVIPKV
NEYVRIKRGVYANDIGQIFEVHEKGIYAIVRLIPRIVYDKYNNSKKDQYDNVGISASVNK
SHSGIHYDGANNHLDQIYPLMDKMNTNNQLNNGTSAIVPLSGEKLSAIDEALQIRRKKKK
ERPLKKLFDRDEIEQIGGVIEHGPYPGTIKYQNNIFEENGYLLKKMNIKYLISENANITL
TEIRDFNKNNTNEEDINLHISKSFINKNSLHLFKKGERVKIMKGELFNLIGTITNINDSV
LSVNPDNLAKEFKFLPSDVTKYFTEGDNVTVINGLHKGKSGLISLLDYKENIALIFSPSL
NTEFRSSIQDLTGTISSSSNTVEGLGGVNTLNGFSIGDLIELNDRQIGVLTYIDKNKHIR
VLTNSNKILHTTIGSITYKRSAIGQICKDENGNIIQSKDTIQLTKGAHKNKTAIVSYIWK
NKIFAKISKKIEDNGFVVVDCENCLLSGNVNEKKKIITQHNLFRNNNMQRRNTFQSFIGK
TVKILSGVYKGLLADVIDAERDEFTLLLKIKPKTIRQKRIECAIADAYKDDKIFDDKNIE
KKRNGISSNDYRGKFDKNKTFEEDEERRRTSFNLPFYNDVNDHKNYDRRKNDQRYDRRYD
KNYNDGYNSYSSHANKSNYYDDEKKKKKHHDTSNKKYHQYDEHESNWKYSSHNKDDKNYL
KNHKSTENMDDYYTSNKNGNTNRFHNEKDNKYDKRKTSPTHSEYKKNDNLHEYDQAENQN
NFNDINDENRDEYNKANSDWVIAGVIIKIVTPGLFYNETGRIAEVIKKGSYTILKIETDK
TSFNIVSEAVVPLKPSKPNDEVIAILDGGKINQGTVIDISNDNKVEISTINGNINCDMKH
VFLYKKV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaactagtgacgaagaaggggctgaactttttaacgatgaaattaataagcca
aatgaagaagaagaagatgatgaagaagtaagagatagtgaggaaaatgaaagcgatgaa
gatatatctcaatcgaaaaaaaaacgaaaaaaaataaatcatacagtatcttttgtagat
aatgaagcagatgaagaagatgatgaatataacgacgacgacgatgatgatgatgatatt
gattatgataaaataactggaaataaaacagggaacaaaaaaagaaaagtaggaaaaaat
aaatatgtttctacttttttagatacagaagcacaagtaggagatgatgaagaagaagaa
gaatatgcaagttcctatgtcgacgaatttgaagaagctaaaagattagaaaaaaaaaaa
ttatatgaaaccaaattaaaaagtgggacaaatcatttggctcaagcaattaataaatta
tcacaaagatatgaacatgaaaaagatttaaaagatggagcatccgatgatgaaacttta
acagatgaagaaatgtctgaagatgaagaatattttgatgaaggtgaaggcttaagtgca
tttgatagtcctaaaatgtggttaatcaaattatttagaaatggttctgaaagaacttta
gctatgggtatatattataaatatatgaagctacaatctagcgattttaatattaaaggt
atatatgtatctgatgatttaaaggggtatatatatatagaagcagatagtttatatatg
ctaaaaagatttctattaggatttaaatttattaatttaaatgatatatctattgtccca
gtacaagaattaacatctatatttgctatgtctcattcaaaagtcgttataccaaaagtt
aatgaatatgtaagaataaaaagaggtgtatatgcaaatgatataggacaaatttttgaa
gttcacgaaaaaggaatatatgctatcgtccgtttaataccgagaatagtatatgataaa
tataataattcaaagaaagatcaatatgacaatgtaggtatatctgcatctgtgaataaa
agccattctggtattcattacgatggagcaaataatcatttagatcaaatatatccattg
atggataaaatgaatacaaataatcaactaaataatggaactagtgcaatagtccctttg
tcgggtgaaaagttaagtgctatagatgaagcattacaaattcgaagaaaaaaaaaaaaa
gaaagaccccttaaaaaactatttgatagagatgaaatcgaacaaataggaggggtaata
gaacatggaccatatcctggaactattaaatatcaaaataatatatttgaagaaaatggc
tatttattaaaaaaaatgaatataaaatatttaattagtgaaaatgcaaatataacatta
acagaaatacgggattttaataaaaataatacaaatgaagaagatataaatttacatata
agtaaatcttttataaataaaaattcgttacatttatttaaaaaaggcgaaagagtcaaa
attatgaaaggggaattatttaatttaataggtacaataactaatattaatgacagtgta
ttaagtgtgaatcctgataatctagctaaagaatttaaatttttgccaagtgatgtaact
aaatattttacagaaggagataatgtaactgttataaatggtttacataaaggcaaaagc
ggattaatatctttattagattataaagaaaatattgctctcatattttcaccgtcttta
aatacagaatttcgatcatcaatacaagacctaactggcactatcagtagcagtagtaat
actgttgaaggattgggaggtgttaatactttaaacgggttctcaataggagatctaatc
gaattaaatgatagacaaataggtgtattgacatatatcgataaaaataaacatattcgt
gtattaacaaatagtaataaaattttacacacaaccattggttcaattacatataaaaga
tctgctatcggacaaatatgtaaagatgaaaatgggaatattattcaatcaaaagatact
atacaattaactaaaggggcacacaaaaataaaactgcaattgttagttatatatggaaa
aataaaatctttgcaaaaataagtaaaaaaattgaagacaatggttttgtagttgttgat
tgtgaaaattgtttacttagtggaaatgtaaatgaaaaaaaaaaaataataacacaacat
aatttattcagaaataataatatgcaaagaagaaatacgtttcaatcatttattggaaaa
acagttaaaatattatcaggagtttataaaggtcttttggctgatgttatagatgctgaa
agagatgaatttactttgcttttaaaaattaaacccaaaactatacgacaaaaaagaata
gaatgtgcaatagcagatgcatataaagatgataaaatttttgatgataaaaatatagaa
aaaaaaagaaatggaataagtagcaatgattatagaggaaaatttgataaaaataaaact
tttgaagaagatgaggaaagaagaagaactagctttaatctaccattttataatgatgtt
aatgatcataaaaattatgatagaagaaaaaatgatcaaagatatgacagaagatatgat
aaaaattataacgatggatataatagctattctagtcatgcaaataaatcaaattattat
gatgatgaaaaaaaaaaaaaaaaacatcatgatacttcaaataaaaaatatcatcaatat
gatgaacatgaaagtaattggaaatattcttcacataataaagatgataaaaattattta
aaaaatcataaaagtacagaaaatatggatgattattatacatcaaataaaaatggaaat
acgaaccgatttcataatgaaaaagataacaaatatgataaaagaaaaacaagtccaaca
cattctgaatataaaaaaaatgataatttacatgaatatgatcaagcagaaaatcaaaat
aattttaacgatataaatgatgaaaatagagatgaatataataaagcaaactcagattgg
gtaatagcaggtgtaattatcaaaattgtaacacctggattattttataatgaaacagga
agaatagcagaagttattaaaaaaggttcatatactatactcaaaattgaaacagataaa
acatcttttaatatcgtttcagaagctgttgtaccattaaaacctagtaagccaaacgat
gaagttattgccattttagatggaggaaaaattaatcaaggaactgttattgatatatca
aatgataataaagtagaaatttccactataaatggaaatataaactgtgacatgaaacat
gtttttttgtataaaaaggtgtaa
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