Plasmodium chabaudi: PCHAS_0309000
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Entry
PCHAS_0309000 CDS
T01108
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03013
Nucleocytoplasmic transport
pcb03015
mRNA surveillance pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_0309000
09122 Translation
03013 Nucleocytoplasmic transport
PCHAS_0309000
03015 mRNA surveillance pathway
PCHAS_0309000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0309000
03041 Spliceosome [BR:
pcb03041
]
PCHAS_0309000
Enzymes [BR:
pcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCHAS_0309000
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PCHAS_0309000
Spliceosome [BR:
pcb03041
]
Complex C
Other components
EJC/TREX
PCHAS_0309000
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PCHAS_0309000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
3493902
NCBI-ProteinID:
XP_016653188
UniProt:
A0A077THK3
LinkDB
All DBs
Position
3:complement(312623..314090)
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AA seq
457 aa
AA seq
DB search
MGHNVQDELVDYEDDDNMLDNKDVKGDIGRNLLNNNNKGVNDGGAMRGSYATVHTGGFKD
FFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLET
DSKDIKEEKDMNNAGGDASQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEVVYG
GISMNKHVALFKGNNVPHIIIGTPGRILALIREKYLLTDKIQHFVLDECDKCLEKLDMRG
DVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKL
QEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLNQEERIER
YDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRAGRFGTKGLAVT
FVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggggcataatgttcaagatgagttagtagattacgaagatgatgataacatgttagat
aataaggatgtcaaaggtgacatcggacgtaaccttttgaataacaataataaaggagtt
aatgatggtggtgctatgagaggtagttatgctactgttcatactggagggtttaaagat
ttttttttaaaaccagaattattaagagcaattagcgaaagtggatttgaacatccatct
gaggtacaacaagaaactataccagcagcaataacaggtaccgatattttatgtcaagca
aagagtggtatgggaaaaactgctgttttcgttttatcaattttacaacaacttgaaact
gatagcaaagatataaaagaagaaaaggatatgaacaatgctggtggagatgcaagtcaa
aataaatatgttagatgtttaggtatagcacatactcgtgaattagcttatcaaataaaa
aatgaatttgatagatttagcaaatatttaaaaaatgttagatgtgaagttgtttatggt
ggtatatctatgaataaacatgtagccttattcaaaggaaataatgtacctcatataatt
attggtacacctggccgtatattggcattaattagagaaaaatatttattaacagataag
attcaacattttgttttagatgaatgtgataaatgtttagaaaaattagatatgagaggt
gatgtacagaaaatttttatttcgactcctttaaaaaaacaagttatgtttttttcagca
actatggcaaaagaaatgagagatgtatgcaaaaaatttttacaaaaccctgtagaaata
tttattgatgatgaagctaaattaaaattacatggactattacaacattatgttaaatta
caagaaaaagataaaacaagaaaattaatagaaatattagatgccttagaattcaaccaa
gttataatttttgttaaatctgttacaagagctatcacattagataaattattaactgaa
tgcaatttcccatccatagctatacatggtggtttaaatcaagaagaaagaattgaaaga
tatgataaatttaaaaagtttgaaaacagaatattagtatccactgatttatttggaaga
ggtattgatattgaaagaataaatatcgttattaattatgatatgccagaaaattcagat
tcttatttacacagagtcggaagagctggaagatttggtacaaaaggtttagctgttact
tttgtatcttctcaagaagatacattagctttaaatgaagttcaaaccagatttgaggta
gctatttctgagatgccaaataaaatagattgtaacgaatatattaaccaataa
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