Plasmodium chabaudi: PCHAS_0410000
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Entry
PCHAS_0410000 CDS
T01108
Name
(RefSeq) pre-mRNA splicing factor, putative
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03013
Nucleocytoplasmic transport
pcb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PCHAS_0410000
03015 mRNA surveillance pathway
PCHAS_0410000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0410000
03041 Spliceosome [BR:
pcb03041
]
PCHAS_0410000
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PCHAS_0410000
Spliceosome [BR:
pcb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
PCHAS_0410000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
3498820
NCBI-ProteinID:
XP_745696
UniProt:
A0A4V0K2Z2
LinkDB
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Position
4:complement(<364718..>366201)
Genome browser
AA seq
417 aa
AA seq
DB search
MKGGGFYKGTSSEQTPFFVDKEKKLIEKLAWPEIYNHKININKINFDIVEKWVQKRLIDL
LGFEDDILCDYCISQLKDEQDGRDYEENRYLDSKKLKINITGFIGNKKSDIFVRELLELL
IENEKNEERVLKSQLENKKSEIESAKNETASITKNIKALKNIYNENDGNRNRSTNFIKDK
TKRENRDRRNERNITSSNESDNISYIKKKKKRNERKSISIQSDSSSLSTYKNKKNYKGPI
NRHNNKSSDSDGHSSRSSSSESRSSEYKKRKEKRDKYLKYEKNDNDDRRRGHIVRERNDR
RERERERRMDSGRYRNRHRVRDRSRDRSRDKHRGLNRHRSRDRSRDRRRGRYRSKSRERN
KSSESSSSEENSRSSSNSSDRSDDIKKERKVDNRSNDSNKSDSEGSSNNSYQSSESS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaggtggattttataaaggaacgagtagtgagcagactccattttttgttgat
aaagaaaagaagttaatcgaaaaattagcatggcctgaaatttataaccataaaataaat
ataaataaaataaattttgatatagtagaaaaatgggtacaaaaaaggttaatcgattta
ctaggatttgaagatgatatattatgtgattattgtatatcccaacttaaggatgagcaa
gatggaagagattatgaagagaatagatacttggactcgaagaagttgaaaataaacatc
actgggttcatagggaacaaaaagagcgatatatttgttagagaattgctcgaattatta
atagaaaatgaaaaaaatgaagaacgagttttaaaatctcaacttgaaaataaaaaaagt
gaaatagaatcagctaaaaatgaaactgcatctataacaaaaaatataaaagccttaaaa
aatatatataatgaaaatgatggaaatcgaaatagatctacgaattttataaaagataaa
acaaaacgagaaaatagagatcgaagaaatgaacgtaatattacatcatctaatgaaagt
gataatatatcatatattaaaaaaaaaaaaaaaagaaacgaaagaaaatcaatttcaata
caatccgattcttcatcattaagtacttataaaaataaaaaaaattataaaggaccaata
aataggcacaacaataaaagttctgattcggatgggcactctagtcgttcttcatcatcc
gaaagtagatcctctgaatataaaaaaagaaaagaaaaacgagataaatatttaaaatat
gaaaaaaacgacaacgatgatcgaagaagaggccatatagtaagggaaagaaacgacaga
agagaaagagaaagggaaagacgaatggatagtggaagatataggaacagacacagagtt
agagatcgaagcagagataggagtagagataaacatagaggactaaacaggcatcgaagt
cgagacagaagtagggaccgaagaaggggcagatatcgctctaagtctagggaaagaaat
aaatctagcgaatcaagttctagtgaagaaaattcacgatcatcatcaaatagcagtgac
agaagtgatgatattaaaaaagaaagaaaagtagataaccgctcaaatgattcaaataaa
tctgactctgaaggtagcagtaataattcataccaatcttctgaatcatcataa
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