Plasmodium chabaudi: PCHAS_0523300
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Entry
PCHAS_0523300 CDS
T01108
Name
(RefSeq) eukaryotic initiation factor 4A-III, putative
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03013
Nucleocytoplasmic transport
pcb03015
mRNA surveillance pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_0523300
09122 Translation
03013 Nucleocytoplasmic transport
PCHAS_0523300
03015 mRNA surveillance pathway
PCHAS_0523300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0523300
03041 Spliceosome [BR:
pcb03041
]
PCHAS_0523300
03009 Ribosome biogenesis [BR:
pcb03009
]
PCHAS_0523300
03012 Translation factors [BR:
pcb03012
]
PCHAS_0523300
Enzymes [BR:
pcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCHAS_0523300
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PCHAS_0523300
mRNA cycle factors
Stress granule specific factors
PCHAS_0523300
Spliceosome [BR:
pcb03041
]
Complex C
Other components
EJC/TREX
PCHAS_0523300
Ribosome biogenesis [BR:
pcb03009
]
Eukaryotic type
90S particles
Helicases
PCHAS_0523300
Translation factors [BR:
pcb03012
]
Eukaryotic type
Initiation factors
eIF-4
PCHAS_0523300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BATS
AAA_19
AAA_30
CMS1
Helicase_RecD
AAA_7
Bac_DnaA
NACHT
Motif
Other DBs
NCBI-GeneID:
3493080
NCBI-ProteinID:
XP_740015
UniProt:
A0A077XDJ4
LinkDB
All DBs
Position
5:855060..856232
Genome browser
AA seq
390 aa
AA seq
DB search
MDKEETYKSSEKLEICTSFESIGIDEGLLRGIYAYGFERPSAIQQRGIKPILSGRDVILQ
SQSGTGKTCVFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTVYCCI
GGKKLSEDIKALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQV
YDIYRFLSPNTQIVLSSATLPQEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKE
QWKYETLADLYESLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIML
KFRQCKYRVLISTDIWGRGLDVHEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFV
KNDDIKILRDIEQFYSTQIDEMPMNITELL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagaaacatataaatcttctgaaaagttggaaatatgtacaagcttcgaa
agtataggaattgatgaaggattgttaagaggaatatatgcttatggatttgaaagacca
tcagcaatacaacaaagaggtattaaaccgatattaagtggtcgagatgttatattacaa
agtcaaagtggtacaggaaaaacatgtgtgtttgctgttggtgctttaaattgtgttaat
agaaatttaaatgaaactcaagtaattattttatctccaactcgtgaactagcagaacaa
acacaaaaagtatgtttagcattagctgattatatacatgtaactgtatattgttgtatt
ggaggtaaaaaattgagtgaagatataaaggcattaaataatggtgttcatattattagt
gggacaccaggaagaatatatcatatgttaaatctaagacatttaaaatgtaaatatata
aaacagctagttattgatgaagcggatgaaatgttaaataaaggatttaaagaacaagtg
tatgatatttatcgatttttatcacctaatactcaaatagttttatcttcagctacttta
ccacaagaagtgttagaaataacaaataaatttatgcacaatccagttaaaattttagta
aaaagagatgaattaactttagaaggtataaaacaattttttgtatccatagaaaaagag
caatggaaatatgaaacattagctgacttatatgaaagcttaactattacacaagcagta
gttttttgtaatactaaattaaaagtagattggctagctaaaaaaatgcaagaatcaaat
ttcactgtgtgcaaaatgcatgcaggaatgagccaaagtgaaagagatgatattatgtta
aaatttagacaatgcaaatatagagttttaatatcaactgatatatggggtagaggattg
gatgtacatgaagtctcattagttgttaattatgatttaccaaactctcgagaaagttat
attcatagaattggaagaagtggtcgatttggaagaaaaggtgttgcaattaattttgta
aaaaatgatgatataaaaattttgagagatatagaacagttttattctacacaaattgat
gaaatgccaatgaatattaccgagttattgtaa
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