Plasmodium chabaudi: PCHAS_0619200
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Entry
PCHAS_0619200 CDS
T01108
Name
(RefSeq) exosome complex component CSL4, putative
KO
K07573
exosome complex component CSL4
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_0619200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0619200
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PCHAS_0619200
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PCHAS_0619200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
3495432
NCBI-ProteinID:
XP_016653469
UniProt:
A0A4V0K4J7
LinkDB
All DBs
Position
6:736194..736925
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AA seq
194 aa
AA seq
DB search
MDNIVLPGEVVGSLNNYINGSNTYILKNEIRSTILGKKNISINNESKQIINIDVIKDYVP
LPQVGDLVICKVYRVTFNMIYCNIMLRNNKPLKNSLKGYINKSDIHIYEGDLGDNFDCFK
QGDIIKAKVLSIGQHSSYKLSTVGSDLGVIIALSEKGDILQPAAWNLMVNLSDMSFEQRK
VSNEFSFPYNAYMS
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggataatattgtattacctggagaagtagtgggaagcctaaataattatataaatgga
agtaatacatacatattaaaaaatgaaataagatcaacaatattaggtaaaaagaatatt
agtattaataatgaaagcaaacaaattattaacattgacgttataaaagattatgtaccc
ttaccccaagtaggagatcttgttatatgcaaagtttatagagtaacatttaatatgata
tattgtaatatcatgttaagaaataataagccattaaaaaatagtcttaaggggtatata
aataaaagtgatatacatatatatgaaggtgatctaggagataattttgattgttttaaa
caaggagacataattaaagcaaaggttttatccataggccaacattcatcatacaagctt
tctactgttggatcggacttaggtgtcatcatagccttaagcgaaaagggtgatatctta
caacccgcggcatggaatttgatggtcaatttaagtgacatgagtttcgaacaaagaaag
gtctccaacgagttttctttcccatataatgcctacatgtcataa
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