Plasmodium chabaudi: PCHAS_0903100
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Entry
PCHAS_0903100 CDS
T01108
Name
(RefSeq) tRNA-splicing ligase RtcB, putative
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcb
Plasmodium chabaudi
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcb03016
]
PCHAS_0903100
Enzymes [BR:
pcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PCHAS_0903100
Transfer RNA biogenesis [BR:
pcb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PCHAS_0903100
Prokaryotic type
tRNA splicing ligases
PCHAS_0903100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
3494636
NCBI-ProteinID:
XP_741555
UniProt:
A0A077XGA9
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All DBs
Position
9:180763..182286
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AA seq
507 aa
AA seq
DB search
MMKHGKSENVFKYIEKTNETNLYRINKGLVPGMNVEGNMYVNERLKLLIDEEINMYQLNQ
RSTFLPAVIQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFDMNNEKAVISPGGVGF
DINCGVRLIRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALNLGMDW
SVKEGYSWIEDKLNCEDNGRSLYANSDYVSVRAKKRGITQMGTLGAGNHYAEIQIVDEIY
DKRSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIEMEKIMSKYKINVIDKQLACTPI
HSPEGQNYLKAMGAACNFAWINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKI
EEHFINGKVQNLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGTEKA
MESTFGSTCHGAGRALSRNKSRNALSYSDVLTKLKEKNISIRVASPKLIMEEAPESYKNV
SEVVQTCHDSGISNKCFRLRPVAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaacatggaaaaagcgaaaatgttttcaaatacattgaaaaaacaaatgaaacg
aacctgtaccgaataaataaaggacttgttcctggtatgaatgtagaagggaacatgtat
gtaaatgagagattaaaattattaatagatgaagaaataaacatgtatcaactaaatcaa
cgctctacatttcttcctgctgtaatacaaatagctaatgtctcgactcttcccggaatt
gttaaagcttctattgcactacctgatgtacatgcgggttatggattttcaataggcaat
gttgcagcatttgatatgaacaatgaaaaggctgttatatccccaggtggagtagggttt
gatataaattgtggagtaagattaattcgaaccaatttattttacaatgatattaaagat
aaacaagaagagttagctcaactactttttaatcatataccagtaggagttggatctcaa
ggatttattttatgtaatcaaaataatttagatgatgcattaaatttaggtatggattgg
tcagttaaagaaggatattcatggattgaagataaactaaattgtgaagataacggtaga
agcttatatgctaatagtgattatgtttccgttcgagcgaaaaaaagaggaatcacacaa
atgggcacattaggtgctggaaatcattatgcagaaatacaaattgttgatgaaatttat
gataaaaggagtgctaaattaatggggattgaaaaaaaaaatcaagtatgtattatgatc
cattcaggtagtagaggattgggacatcaaattgctactgatgccttaatagaaatggaa
aaaattatgagcaaatataaaataaatgtaatagataaacaattagcttgtacacctatt
cattcacctgaaggacaaaactatttaaaagcaatgggcgctgcttgtaattttgcatgg
attaatagatcttctatgacatttttagctagacaagctttttcaaaagtatttaatcaa
tcaccggatgatttagatatgcatgtaatatatgatgtttcacataatatagcaaaaatt
gaagaacattttattaatggtaaggtacaaaatttacttgtacatagaaaaggatcaact
agagcattcccaccatttcatccattagtacccttagattatcaatactgtggtcaacca
atattaataggtggtacaatgggaacatattcatatgtattaacaggaactgaaaaagca
atggaaagcacatttggatcgacttgccatggggcaggacgagctttaagtagaaataaa
agtagaaatgcattatcatattctgatgtattaactaaattaaaggaaaaaaatatatca
atacgagttgcctcaccaaaactaattatggaagaggcaccagaatcttataaaaatgtt
tcagaggtagttcaaacatgccatgactcaggaatatctaataagtgctttcgtctaaga
cccgttgcagtcataaagggatga
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