Plasmodium chabaudi: PCHAS_0904400
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Entry
PCHAS_0904400 CDS
T01108
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_0904400
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_0904400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_0904400
03041 Spliceosome [BR:
pcb03041
]
PCHAS_0904400
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PCHAS_0904400
mRNA degradation factors
5'-3' decay
Lsm complex
PCHAS_0904400
Spliceosome [BR:
pcb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PCHAS_0904400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
27794768
NCBI-ProteinID:
XP_016655290
UniProt:
A0A077XED6
LinkDB
All DBs
Position
9:220651..221582
Genome browser
AA seq
132 aa
AA seq
DB search
MVFPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISEC
YVRGSSVKYIRVQDQAIENAIEETAEQKSRNAGRGRGGVRGSGRNRGRGFGRGTDKRGGR
AGNIRTAGRGGY
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcctttaactttgttaaaatgttctcaaaatcaaccagtgatggttgagcta
aagaatggagaaacatatagtggatttttagtattttgtgatcgatttatgaatttacat
atgaaaaatataatatgcacatcaaaagatggagataaattttggaaaatatccgagtgc
tatgttagaggaagtagtgtgaaatatattcgagtgcaagaccaagctatagagaatgcc
attgaggaaacagctgaacaaaaatcacggaatgccggacgaggccgcggtggcgtaaga
ggaagtggacgcaatagaggccgaggatttggtaggggaacagacaaaagaggtggaaga
gctggaaatataagaacagctggacgaggaggatattaa
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