Plasmodium chabaudi: PCHAS_1008100
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Entry
PCHAS_1008100 CDS
T01108
Name
(RefSeq) replication protein A1, large subunit, putative
KO
K07466
replication factor A1
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03030
DNA replication
pcb03420
Nucleotide excision repair
pcb03430
Mismatch repair
pcb03440
Homologous recombination
pcb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCHAS_1008100
03420 Nucleotide excision repair
PCHAS_1008100
03430 Mismatch repair
PCHAS_1008100
03440 Homologous recombination
PCHAS_1008100
03460 Fanconi anemia pathway
PCHAS_1008100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcb03000
]
PCHAS_1008100
03032 DNA replication proteins [BR:
pcb03032
]
PCHAS_1008100
03400 DNA repair and recombination proteins [BR:
pcb03400
]
PCHAS_1008100
Transcription factors [BR:
pcb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
PCHAS_1008100
DNA replication proteins [BR:
pcb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
PCHAS_1008100
DNA repair and recombination proteins [BR:
pcb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
PCHAS_1008100
MMR (mismatch excision repair)
PCHAS_1008100
DSBR (double strand breaks repair)
HR (homologous recombination)
PCHAS_1008100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
DUF8448
Baculo_LEF5_C
Zn_ribbon_HMPTM
Motif
Other DBs
NCBI-GeneID:
3492383
NCBI-ProteinID:
XP_739325
UniProt:
A0A4V0K2B7
LinkDB
All DBs
Position
10:complement(<334901..>338389)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNKNEDILSKATPNFIYKFFTEPNSPEALRWINSEVNLICFSQMNAGGSQVFLKVIDGSI
PPQYYAIVHLGAEDNGNMDPPLSYVKKVIKIQKFSITNYYGKLFILAKKVTIYLNIENFD
IEDLFKKHHLQSISYLLLNSQNDYGGSNDQRYPTSNRTREDNSYACEGYNNNNNDNNGNY
PKYSNNPPSNYNQRNNPNGNNPRGNTSPYKYDDMYRGNNNKECNNNWQSSNNYNKPGGEN
YEMNYRNPNMSITKDTPTKNTMPGGYNESYNNKENMNFREDPSRRDPNGRNGYNNPHNNN
ENNNYYNRGDDNENNMGLNNRSRAPYNEYPNYNNNITSKNDGRLPMHEKNINACKMNSEY
SNNRNYTTNYDHNRTFENDQYNNNNKSKTHNININPNTHHPGKYDTHAYKMGDSGYYSGD
NNRNSNNNSYQKNIDQGYLKSKSSGSLPLESELNERSRSHEYKYESNNGRYSDRREGNAM
DNYGRNKPGMMPEETRQRDFQGNDNYYNERDNNDGFIKNGNNRLNGSTKENAMYRERSVD
NYNSHNDNNMNMGSSIYGTEKENIHIPKRGNCDSDEMIEQRKRTTVAREINNNGNIRNPD
LEIDRTRCNPYEKTDNSNFNQRGDKKGSYMKNVEDCANSINGSMIYMNETNETLSNFDDV
NEKKKVNETKLLKENNLNRNNRKCNPYPNSAVIKINDGILMPINKLSQYSTKWIIKARVQ
SKDNIRKFYTGNKEGKVFNIELCDESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKS
ANKKFNTLKHDCEITLDENSILELLEENDMNIPKYIYNFYPISEIKANINTGTLVDVIGI
VLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWGESAVKMEEMNITENCIICFK
CLKVGEWQGKKLESHPKTKVEIDPELDKAYTLKNWWANNKKNVYNTINLATSTSNNNMLN
LESQKTIQEIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNSIPVYSACPNCNKKMVATVI
EDGEQDMDENVSESMYCSKCNKNNIPVYNYSINLKITDNTDSLRVSAFANAAKTIMNGLS
AEEFMKLRQEHISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKKNYTILETIPLSK
LLVDNCRYLIKEIKLATEAIQE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaacgaagatattttatcgaaggccacaccaaattttatatataagtttttc
acagaacctaattcacctgaagcattaagatggataaactctgaggtgaatttaatatgt
tttagccaaatgaatgcagggggaagtcaggtatttttaaaagtaattgatggaagtatc
cctccacaatattatgctattgttcacttaggtgccgaagataatggaaatatggaccct
ccattatcttatgtaaaaaaagtaattaaaatacagaaattttctataacaaactattat
ggaaagctttttattttagcaaaaaaagttacaatttatttaaatattgaaaattttgat
atagaagatttatttaaaaaacaccacttacaaagtatatcttatttgcttttaaattca
caaaatgattatggcggttctaatgaccagcgatatccaactagcaataggactagggag
gacaatagctatgcatgcgaaggatataataacaataataatgacaataatggtaactat
cctaaatacagcaataacccccctagtaattataaccaaagaaacaatcccaatgggaat
aatccaagaggaaacacctcaccctataagtacgatgatatgtatagaggaaataataac
aaagaatgtaataataattggcaaagttcgaataattataataaaccaggtggtgaaaac
tatgaaatgaattatcgcaatcctaatatgagtataacaaaagatacacctactaaaaat
accatgccaggtggctataatgaatcttataataacaaagaaaatatgaactttagagaa
gatccttcacgacgtgatcctaatggccgaaatggttacaataatccccataataataat
gaaaataacaattattataatagaggtgatgataatgaaaacaatatggggctaaataat
agatcgagagcaccatataatgaatacccaaattataacaataatataactagtaaaaat
gatggaagattaccaatgcacgaaaaaaatataaatgcatgtaaaatgaattcagaatat
agcaataacagaaattatactacgaattatgaccataatcgcacttttgaaaatgatcaa
tacaacaataataataagagcaaaactcataacatcaatataaatccaaatacacatcac
cctggaaaatatgatacgcatgcttacaaaatgggggattctggatattatagtggcgat
aataatagaaatagtaataacaatagttatcagaaaaatatagaccaaggctatttaaaa
tccaaatcctcaggctccttgccacttgagtctgaactgaacgaaagaagtagatcccat
gaatataaatatgaatcaaacaacggaagatatagtgatagacgagaaggaaatgcaatg
gacaattacgggcgaaataaacctggaatgatgcctgaggaaactaggcaacgtgatttt
cagggaaatgacaattattataacgaaagagataataatgatggttttataaaaaatggc
aataatagattaaacggaagtacaaaggaaaatgcaatgtatagagaaagaagtgtcgat
aattataattctcataacgataataatatgaatatggggagtagtatatatggaaccgaa
aaagaaaatattcacattcctaagaggggaaattgtgacagtgatgagatgatagagcaa
agaaaaagaactacagtggcaagagaaataaataataatggaaatattcgtaatcctgat
ttagaaattgatagaactcgatgtaacccttatgaaaaaacagacaattctaactttaat
caacggggtgacaaaaaaggtagttatatgaaaaatgtcgaagattgcgcaaatagcata
aatggcagtatgatttacatgaacgaaacaaatgaaacgctaagcaactttgatgatgta
aatgagaaaaaaaaagtaaatgaaaccaaattattaaaagaaaacaatttgaatagaaat
aacagaaaatgtaatccttatccaaatagtgcagttataaaaataaatgatggtatatta
atgccaataaataagttgtcacaatattctacaaaatggataatcaaagctagagttcaa
tcaaaagataatataagaaaattttatactgggaataaagaaggcaaagtatttaacatc
gaattatgtgatgaatctggggaaataaaggtaaatttttttggaaaagctgtagacaag
tggtatgattatttagaagttggaaaaatatataaaataagtaaaggaaatataaaaagc
gctaataaaaaatttaatacattaaaacatgattgtgaaataactttagatgaaaattca
attttagaattattagaagaaaatgatatgaatataccaaaatatatttataatttttat
ccaattagtgaaataaaagctaatattaatacaggaactttagtagatgtaatagggata
gtattaagttttcaagagctaaatcaaatccttattaaaaaaactggacaatacaaagaa
aaaaaggatttgatgctaattgacgaaacaaatgaaactattaatgtaacactttggggt
gaaagcgctgtaaaaatggaagaaatgaatataaccgaaaattgtattatatgttttaaa
tgcttaaaagtaggtgaatggcaagggaaaaaattagaatctcatcccaaaacaaaagta
gaaatagatccagaattagataaagcatatactttaaaaaattggtgggcaaataataaa
aaaaatgtttataatacaataaatttggctacttctacttcgaataataatatgctaaat
ttagaatcacaaaaaactatacaggaaattaaaaaaaatgttaatttagcaaatgaagaa
gtgctatccggaaagggaataatttttacaacttttgggtttatagatcacatatacaat
tcaatacctgtatattcagcttgccctaattgtaacaaaaaaatggtagcaacggttata
gaagatggtgagcaagatatggatgaaaatgtttcagagtctatgtattgttctaaatgt
aataaaaataatataccagtatataattattctattaatttaaaaattactgataataca
gattctttaagagtatctgcctttgcaaatgctgctaaaactattatgaatggactatca
gctgaagaatttatgaagctaagacaagaacatatttctcaagaaaatattgaaaacttt
gatcttatagaaaaggcaaagctcaacgagttctttttcagaatcaaagcatatatgact
tctcacatggatgagataaaaaaaaattacactattcttgagactatacccctaagcaaa
ctcttggttgataactgtcgctacttgatcaaggaaatcaaactagccacagaagctatc
caagaataa
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