Plasmodium chabaudi: PCHAS_1119200
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Entry
PCHAS_1119200 CDS
T01108
Name
(RefSeq) cleavage stimulation factor subunit 1, putative
KO
K14406
cleavage stimulation factor subunit 1
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PCHAS_1119200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1119200
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
PCHAS_1119200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_IFT122_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_1st
DUF8160
CSL4_N
Motif
Other DBs
NCBI-GeneID:
27794899
NCBI-ProteinID:
XP_016653981
UniProt:
A0A4V0K893
LinkDB
All DBs
Position
11:<679647..>681227
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AA seq
526 aa
AA seq
DB search
MKGFLAKNFLSSNNADNKNGSDENDERSEIDKNDERSEVDKNDNEESNENNDIDGKIEND
NINNDNDEAENNEYKKKDNVFSSIDKMTFYECVLKQLADDNLLDTYNTLKREISLEENVN
SENNFLFNLYQKRLYNNPSNVVETEETNINKLTEYNSLNKKKSHIYNNNLILNYENNSNT
IRQIYSYEINSRIELIHKNKCICCANNASRNILCSASSDSTIKMIKINDLKKKKIFLIDN
KHTKKINSLKFHPTKNILFSASDDCKIQIIDINKALKKKKKLYYNQYKHMKDKNKRNDEE
KNIIIQDKNPFISMYVHPCGDFLYACNKNENIIKLYDLQTLNCFMTTNKSTYHSSTINHI
SGTSDGHIYGSVSVDGNIKIWDGLNSNLIHTQYNAHNGYSIQSIEFNKSNFYILTSGLDG
QTKIMDMRNFKTLYTFGNGLSCISNKSIFMNNESFIANIFQANDIFDSKFYIYNSYFGNI
EHNIQNVHNDKINDIINARDGLDVHTASYDGFCKTIKINQMYSHDN
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggatttttagcgaagaactttctttcatcaaataatgcagataacaaaaatggg
agtgatgaaaatgatgaaagaagtgagatagataaaaatgatgaaagaagcgaggtagat
aaaaatgacaatgaagagagtaatgaaaataatgacatcgatgggaaaattgaaaatgat
aatattaacaacgataatgatgaggctgaaaataatgaatataaaaaaaaggataatgta
ttttcaagtattgataaaatgacattttatgaatgtgtgttaaaacagctagctgatgat
aacttacttgatacctataatactttaaaaagagaaatcagtttagaagaaaatgtaaat
agtgaaaataatttccttttcaatttatatcaaaagagattatataataatccttctaat
gtagtagagaccgaagaaacaaacataaataaattaaccgaatataattctttaaataaa
aaaaaatcacatatatataataataatttaatattaaactacgaaaataatagcaacacc
atacgacaaatatactcttacgaaattaatagtcgtatagaactaattcataaaaataag
tgtatatgttgtgctaacaacgcatcgagaaatattctttgttccgctagttcagatagt
acaataaaaatgataaaaataaacgatttaaaaaaaaaaaaaatatttcttatagataat
aaacacacaaaaaaaataaatagtctaaaatttcatccaacaaaaaatattttattttca
gctagcgatgattgtaaaatacagattattgatataaataaagctttaaaaaaaaaaaaa
aaattatattataatcaatataaacatatgaaagacaaaaataaaagaaatgatgaagag
aaaaatattataattcaggataagaatccatttatatcaatgtatgtacacccatgtggt
gatttcttatatgcatgtaataaaaatgaaaatataataaaattatatgacctacaaacc
ttaaattgttttatgacaactaataaaagtacatatcatagttcaactattaatcatatt
agtggaacatctgatggacatatatatggttccgtttcggttgatggaaatataaaaata
tgggatggacttaattcaaatttaatacatacacaatataatgcacacaatggatattca
atacaatccattgaatttaataaatcaaatttttatatattaacatccggtttagatggt
caaacaaaaataatggacatgagaaattttaaaactttatatacatttggaaatggatta
tcatgtatatcaaataaaagtatttttatgaataatgaatcttttatcgctaatattttt
caagctaatgatatttttgattcaaaattttatatatacaattcctattttggtaatata
gaacataatatacaaaatgtacataatgataaaataaatgatattataaatgcaagggat
ggattggatgttcatacagctagctacgatggattttgtaaaaccatcaaaataaatcaa
atgtattcccatgataattaa
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