Plasmodium chabaudi: PCHAS_1310400
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Entry
PCHAS_1310400 CDS
T01108
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5, putative
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_1310400
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_1310400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1310400
03041 Spliceosome [BR:
pcb03041
]
PCHAS_1310400
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PCHAS_1310400
mRNA degradation factors
5'-3' decay
Lsm complex
PCHAS_1310400
Spliceosome [BR:
pcb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PCHAS_1310400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
3489280
NCBI-ProteinID:
XP_016654456
UniProt:
A0A077TT21
LinkDB
All DBs
Position
13:<429227..>429853
Genome browser
AA seq
101 aa
AA seq
DB search
MATISGSETFLPLALMDKCIGSKIWIMMKGDKEIIGKLVGFDEYVNMVLEDVTEYTYTNN
VKKVNKIKKILLNGLNITIMVPGGTPVNYYDYEEKLEESIV
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaataagcgggtcggagacatttttaccacttgctttgatggacaaatgtatt
ggtagtaaaatatggataatgatgaaaggcgacaaggaaataattgggaagctagttggc
ttcgatgaatatgtcaatatggtattagaagatgttactgaatacacatatacaaataat
gttaagaaggtaaacaagattaaaaaaatattattaaatgggttgaatataacaattatg
gttcctggaggtacccctgtcaattattatgactatgaagaaaaattagaagaaagcatt
gtttaa
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