Plasmodium chabaudi: PCHAS_1310600
Help
Entry
PCHAS_1310600 CDS
T01108
Name
(RefSeq) poly(A)-specific ribonuclease PARN, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_1310600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1310600
Enzymes [BR:
pcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PCHAS_1310600
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
PCHAS_1310600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
3498041
NCBI-ProteinID:
XP_016654457
UniProt:
A0A4V0KCI1
LinkDB
All DBs
Position
13:complement(433938..436220)
Genome browser
AA seq
760 aa
AA seq
DB search
MLSVTNYFFKNVVLKEKTRFMKYNILKRAYSRITSVNINNWNNIHKEILSKIQESDFVSI
DVEYTGLHLKDERYISIDSSYEAHCYGAKSFFPCQIGITIAKKKEITTHDKCNEIKNNMI
KNKNIHNIKVFENNDKTNNVSPMKNEQEWDISPYCIYIFPKENKYFSVSTSTLIFLKENN
FDFNEWIFNGVSYLRPNEEDEKKKHIFEKIDGLKNLLNKCNTKKDYNKETEENKIDINKI
INEIENYKAVDDEDKQAVIEIVKKIGIWLSNENETQFNNTAKDELKDASLSNSCYKGVDY
KNSISETFIANDKNLDNSHKSVHNSTEGDEKYSENSKDLNYGNNVEYDKCPLYIEIENPY
LRLLAHTLITKYFNSIFCISVKLNDKKNLAIYKTEKDSYNEQIKALQMEIEKINETIGVR
LLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHAFKRKWTELFPYTIDTKYMNET
NEYLYSLNGPATLKGLCEYMASLISSSKDFDFFFNFLNGNVIDLQQCLIPFVKDEKSAAN
LSGENYNERQPHGAKNDNNDENIGVEGKENDKNQLENNTPYKDDEKSYKDTNTLNDNANA
LKSDEHNAGYDSLLTCLLFIFQCHYILKKNNLSWKNIYFTNTNIVNENKKHFLDIFSNMC
NKIKIVKTQPNVVSLTSSENYEMARHFYMYDYPSYFKKWEIMKIWSPIWITLSKVDDQSC
WVIAKSDDDAKNIKMIYKMLQNPQFKLCTYEEYLNKFKSK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgctaagtgttacgaattatttctttaaaaatgttgttttaaaagagaaaactcgcttc
atgaaatataatatactgaaaagagcctactcaagaataacaagtgtaaatataaacaat
tggaataatatacataaggaaatactaagtaagattcaagaaagtgattttgtttctatt
gatgttgagtatacaggattgcatttaaaagatgagagatacatatccattgattcaagt
tatgaagctcattgttatggcgccaaatcttttttcccctgtcaaataggaataactatt
gccaagaaaaaggaaataacaacccatgacaaatgtaatgagattaaaaataatatgata
aaaaataaaaacatacataatattaaagtttttgaaaataatgataaaactaacaatgtt
tcccctatgaaaaatgagcaagagtgggacatatcaccatattgcatatatatattccca
aaagaaaataaatattttagtgtctctacttcaacacttatatttttaaaagaaaataat
tttgattttaatgagtggatattcaatggtgtaagttatttaagaccaaatgaagaagac
gaaaaaaaaaaacatatttttgaaaaaattgatggattaaaaaacttacttaataagtgt
aacacaaagaaggattacaataaagaaactgaagaaaataaaatagatataaataaaatt
attaacgaaatagaaaattataaagctgtcgatgatgaagataaacaagcagttattgaa
attgtaaaaaaaattggtatatggttatctaatgaaaatgaaactcaatttaacaatacc
gctaaggatgaattaaaagatgcaagcctatctaattcatgctacaaaggtgttgactat
aaaaatagcatctctgagacttttatagcaaatgataaaaatcttgataacagccataaa
tctgtgcataattctactgaaggcgatgaaaaatattcagaaaattccaaagatttgaat
tatggtaataatgtagaatatgataaatgccccttatatattgaaatagaaaacccatat
ctcagattacttgcacacacattaattacaaaatattttaactcaattttttgtatatct
gttaaattgaatgataagaaaaatttagcaatatataaaacagaaaaagattcttataat
gagcaaataaaagcattgcaaatggagatagaaaaaataaatgaaacaattggtgttaga
ttattatttgatgaaattataaaaagtaataaaatactaattgggcataattgtttttat
gatattttgcatatatatcaaacattttatcatgaattgccagattcgattcatgctttt
aaaagaaaatggacagaattatttccatatacaattgatacaaaatatatgaatgaaaca
aatgaatatttatattcattaaatgggcctgcaacattaaaagggttatgtgagtatatg
gcatcattaatttcttcaagtaaagactttgattttttttttaattttctcaatgggaat
gtaatagaccttcaacagtgtcttattccctttgtaaaagatgaaaaaagtgcggcaaat
ttgtctggagaaaattataatgaacgacaaccacatggtgccaaaaatgataataatgat
gagaatataggggtagaagggaaagaaaatgacaaaaatcagttagaaaataatactccg
tacaaagacgatgagaaatcttataaagatacaaacacattgaatgataatgcaaatgca
ctaaagagcgatgaacataatgcaggctatgacagtcttttaacatgccttctttttata
tttcaatgccattatattttaaaaaaaaataatttatcctggaaaaacatttattttact
aatacaaatattgtaaatgaaaataaaaagcattttttagatatattttcaaatatgtgc
aacaaaataaaaattgttaaaacacaaccaaatgttgtttcgttaacgagttcagaaaat
tatgaaatggcaaggcatttctatatgtatgattatccaagttattttaaaaaatgggaa
ataatgaaaatatggtcacctatttggataaccttgagtaaggtagatgatcaatcatgc
tgggtcatagcaaaaagtgatgacgatgcaaaaaatattaaaatgatttataaaatgttg
cagaatcctcaattcaagttatgcacatatgaagaatatttgaataaatttaaatctaaa
taa
DBGET
integrated database retrieval system
