Plasmodium chabaudi: PCHAS_1312900
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Entry
PCHAS_1312900 CDS
T01108
Name
(RefSeq) ATP-dependent RNA helicase DDX5, putative
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_1312900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcb03041
]
PCHAS_1312900
03009 Ribosome biogenesis [BR:
pcb03009
]
PCHAS_1312900
Enzymes [BR:
pcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCHAS_1312900
Spliceosome [BR:
pcb03041
]
Complex A
U1 snRNP components
U1 related factors
PCHAS_1312900
Complex B
PCHAS_1312900
Ribosome biogenesis [BR:
pcb03009
]
Eukaryotic type
Pre-60S particles
Helicases
PCHAS_1312900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
3497328
NCBI-ProteinID:
XP_016654470
UniProt:
A0A077TT53
LinkDB
All DBs
Position
13:527092..530031
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AA seq
523 aa
AA seq
DB search
MRSFNSFQGRSNNNYQNRGGGSHGNHQGYHSGRKNYGNNSGYHNNNNSGGLGKNLNPVDW
ANFKLVPFEKNFYKEHDDIRRLSSKEVKEIRDKHRITILGGDNIPNPVESINKVGFPDYV
LKSLRNNHIVSPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPSLKHG
DGPIVLVLAPTRELAEQIRQECIKFSVESKVRNTCAYGGVPKGGQIYALRQGVHILIACP
GRLIDLLEQNATNLRRVTYLVLDEADKMLDMGFEMQIRKIVEQIRPDRQTLMWSATWPKE
VQALARDLCKDQPIHVNVGSLTLTACRRIKQEIYLIEEHEKLGNLKSLLQRIFKENDRII
VFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGL
DIKDVKFVINYDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLAKELVKILRESEQ
PIPPQLEKISFSSGNNQRRNPYYSSGRSGYNSNFSGRGGNRYY
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgagaagctttaacagttttcaaggtcgatcaaataataattatcagaaccgtggtgga
ggatcacacggaaatcatcaaggttatcattcaggaagaaaaaattatggaaataattca
ggatatcataataataataattcaggagggcttggaaagaatttaaatccagttgattgg
gctaattttaagttagtgccatttgaaaaaaatttttataaagaacatgatgatatacgt
agattatcatcaaaagaagtaaaagaaattagagataaacatagaattactatattaggt
ggtgataatataccaaaccctgttgaatcaattaataaagttggttttcctgattatgta
ttaaaatctttaagaaataatcatattgtttctcctacccctatacaaatacaaggttgg
cctatagctttatcaggtaaagatatgattggtaaagccgaaacaggtagtggtaaaaca
cttgcttttattttacctgcattcgttcatatattagctcaaccaagtttaaaacatggg
gatggaccaattgttttagtattagcacctaccagagaattagctgaacaaatcagacaa
gaatgtattaaattctcagtcgaatcgaaagttagaaatacttgtgcatatggtggagta
ccaaaaggtggacaaatttatgccttaagacaaggagtacatattttaattgcttgccca
ggacgtttaattgatttattagaacaaaatgcaactaatttaaggagagttacatattta
gttttagatgaagcagataaaatgttagatatgggttttgaaatgcaaattagaaaaata
gtcgaacaaattagacccgatagacaaacattaatgtggtctgctacatggccaaaagaa
gtacaagcactagctagagatttatgtaaagatcaaccaatacatgtaaatgttggttca
ctaactttaactgcatgtcgtagaattaaacaagaaatttatcttattgaggaacatgag
aaattgggaaatttaaaatcactactacaaagaatattcaaggagaatgataggataatt
gtttttgtggaaacaaaaagaagcgctgatttcataacaaaggctttaagactagaggga
atgccagcattatgtatccatggagataaaaagcaagatgaaagaagatgggttttaaat
gattttaaaacaggaaaaagcccaattttaatagcaactgatgttgcatcaagaggtctt
gatattaaagatgtaaaatttgtaattaattatgattttcctaatcaaattgaagattat
gttcacagaattggtagaacaggaagagcaggtgcacatggtgcctccttcacattttta
acatcggataaatatcgattagctaaagaattagttaaaatattaagagaatcagaacaa
cctataccaccacaattagaaaaaatttcattttcatcaggtaacaatcaaagaagaaac
ccttattatagttctgggcgttcaggatataattctaacttctcaggaagaggcggaaat
agatattactaa
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