Plasmodium chabaudi: PCHAS_1358100
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Entry
PCHAS_1358100 CDS
T01108
Name
(RefSeq) exosome complex component RRP42, putative
KO
K12589
exosome complex component RRP42
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCHAS_1358100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1358100
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PCHAS_1358100
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PCHAS_1358100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
3495323
NCBI-ProteinID:
XP_742234
UniProt:
A0A4V0KBA5
LinkDB
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Position
13:complement(2106343..2107188)
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AA seq
281 aa
AA seq
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MSSLKYIEEGINSNIRVDGRTLLTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLL
PPDQNSIDEGFVNLQIDCPASVASNRIKKEHLEIMTSIIYDLCIKNNIDKKKLCVLPSKF
VWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELE
IVENEKLPFPCDNIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCVAFHKLY
GISMEISSILNMSENSVQISQNLFKKINEAIEKIQANTIHV
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgagctctttaaaatatatagaagaaggaataaactccaacattagagtagatggaaga
actttattaacatacagaacaatcgaaataaataaaaatattttagtatcagcagatggg
agtagtagtgttatgaatgaagaaaataatgtaatttgtggaataaagctttcattatta
cctcctgatcaaaattcaatcgatgaaggttttgttaatttacaaattgattgtccagct
tctgtagcttcaaatcgaataaaaaaagaacacttagaaattatgacatccattatttat
gatttatgcataaaaaataatattgataaaaaaaaattgtgtgttttaccttcaaaattt
gtttggggtattgatataaatgttatggttttaaatggtggaggaggattattagatatt
atcagcatagctatatatgtagctttaaatgatatgaatattcctgttgttaaagcacca
aaaaaaatcgatgaattaaatatgttccataatacaaaaagtaaagaatatgaacttgaa
attgttgaaaatgaaaaattaccttttccatgtgataatattcctatatgtatttcaatt
ggagaaataaataataaatatatttatgatatgtcaaaaatcgaggaagaacttgttgaa
aatgttttcgttgttgcagttacatcaagtgggaaatgtgtagcttttcataaattatat
ggtatatcaatggaaatatcttctatattaaatatgtcagaaaattctgtacaaatttca
caaaatcttttcaaaaaaattaatgaagcaattgagaaaatacaagccaataccattcat
gtctaa
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